YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54637579\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVQRSYED FPAMPSAVFR LMGYNVLDAP DETRSRRLLM WIYRWLCTCS HAVCVGFMIF  60
   61 RIFEVKTINS IPLIMRYVTL VTYVINSDTK HATAMQRESI RNLNKKLADL YPKTTKDRVY 120
  121 YRVNEHYWSR SFLAMICIYI GSSIMVVIGP ILQSIFAYFT RHQFTYEHCY PYFIYDPNRH 180
  181 PVWVYIIIYA TEWLHSTHMV ISNVATDLWL LCFQVQICMH FSCMTRSLEE YQPDRTHDVD 240
  241 DNRFLAQMVN KHEYLVILQN DLNGIFGGSL LLSLITTSAV ICTVSVYSLI QGLTLEGITY 300
  301 VFFIGTSVMQ LFLVCNHGQQ LLDLSEDIGH AAYNHNWHKA SIAYKKYLLI IIIRAQKPVE 360
  361 LSAMGYLPIS RDTFKQASRL MSVTYRGLAM IRQMIE

Type	Start	End	Confidence
Cytoplasmic	1	40	0.93
Transmembrane Helix	41	63	0.89
Non-Cytoplasmic	64	72	0.71
Transmembrane Helix	73	87	0.50
Cytoplasmic	88	131	0.56
Transmembrane Helix	132	156	0.85
Non-Cytoplasmic	157	193	0.53
Transmembrane Helix	194	213	0.42
Cytoplasmic	214	264	0.60
Transmembrane Helix	265	290	0.82
Non-Cytoplasmic	291	296	0.49
Transmembrane Helix	297	315	0.85
Cytoplasmic	316	396	0.63