YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773099, gi...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFNFSSHSA APAATATPAT APTNGNEKAT QPLKRGIETD PDSLDSVISN PQSYPITIVP  60
   61 NRPASFYGVA PNGKAFQRQP SCRSRNFRPG SMRRVRRRAV FKNGDCNVVQ KHLQRRRVRF 120
  121 LQDMYTTMVD WQWRWTLLAF ALSFILSWLF FALIWWLIIY THGDLEELHM PDNQEESGWA 180
  181 PCVSAIDGFT SCFLFSIETQ HTIGYGVRTT SPECPEAIFM MCFQSIYGVM SSAFMAGIVF 240
  241 AKMTRAKQRA QTLLFSKQAV ICQRDGCLSL MFRVGDMRKS HIIGAGVRAQ LIRTKSTKEG 300
  301 EVMTQYFTEL EIGSDDSGSD LFFIWPMIIE HKIDENSPLY NLNATDMLQD RFEIVVILEG 360
  361 TVESTGQSTQ ARSSYINTEI LWGHRFDPVV LYNKDLQAYE IDYGRFNETT QVDTPLCSAR 420
  421 ELNEIYKIQE GFRTPETTFT MRQLSHNHSD QAS

Type	Start	End	Confidence
Cytoplasmic	1	135	0.79
Transmembrane Helix	136	159	0.91
Non-Cytoplasmic	160	216	0.70
Transmembrane Helix	217	241	0.82
Cytoplasmic	242	453	0.75