YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125772947\|ref...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKFGHAIS KLLQLSKGYL KRSPVRPKSS FSAPNWIPGR SKWLAFGALT GGLGALLYAL  60
   61 DASVDASHDC VHPPKQFWNH KGLLSALDKE AVRRGYQVYK EVCSSCHSLQ YIAYRNLVNN 120
  121 CMTEAEAKAQ AEQVMVKDGP DENGEYFERP GKLSDYLPSP YPNEDAARSA NNGAYPPDLS 180
  181 YIVSARKGGE DYIFALLTGY CDPPAGFVLR DGQYFNPYFS GGAISMGQVI NNEVVTYADE 240
  241 EVAPSGSQIA KDVVTFLKWT SEPEADERKL LLIRVFLICS FLIGLSYYIK RHKWSALKSR 300
  301 KIFYVPEVTG NGNGQSKGNG HGNVKAKTGE ACPKHEHNKK EGNGKNNDGD WKPK

Type	Start	End	Confidence
Signal Peptide	1	62	0.77
N-region	1	53
H-region	54	59
C-region	60	62
Cleavage Site	62	63
Non-Cytoplasmic	63	269	0.97
Transmembrane Helix	270	289	0.85
Cytoplasmic	290	354	0.85