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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125772921, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGCDQSTVE SLADDPTDSP FDADDCLKVR KYWCFLLSSI FTFLAGLLIV LLWRAFAFIC  60
   61 CRKEPDLGPN DPKQKEQKAS RNKQEFEGTF MTEAKDWAGE LISGQTTTGR ILVVLVFILS 120
  121 IASLIIYFVD ASSEEVERCQ KWSNNITQQI DLAFNIFFMV YFFIRFIAAS DKLWFMLEMY 180
  181 SFVDYFTIPP SFVSIYLDRT WIGLRFLRAL RLMTVPDILQ YLNVLKTSSS IRLAQLVSIF 240
  241 ISVWLTAAGI IHLLENSGDP LDFNNAHRLS YWTCVYFLIV TMSTVGYGDV YCETVLGRTF 300
  301 LVFFLLVGLA MFASSIPEII ELVGSGNKYG GELKREHGKR HIVVCGHITY ESVSHFLKDF 360
  361 LHEDREDVDV EVVFLHRKPP DLELEGLFKR HFTTVEFFQG TIMNPIDLQR VKVHEADACL 420
  421 VLANKYCQDP DAEDAANIMR VISIKNYSDD IRVIIQLMQY HNKAYLLNIP SWDWKQGDDV 480
  481 ICLAELKLGF IAQSCLAPGF STMMANLFAM RSFKTSPDMQ SWTNDYLRGT GMEMYTETLS 540
  541 PTFIGIPFAQ ATELCFSKLK LLLLAIEIKG AEEGVDSKIS INPRGAKIQA NTQGFFIAQS 600
  601 ADEVKRAWFY CKACHEDIKD ETLIKKCKCK NLTVQPRSKF DDLDEHHPAP TFTPPELPKR 660
  661 VHVRGSVSGD ITRDREDTNL LNRNVRRPNG TGNGTGAMHH MNNTAAAAAA AAAAGKQVNK 720
  721 VKPTVNVSRQ VEGQVISPSQ YNRPTSRSSG TGTQNQNGGV SLPAGIADDQ SKDFDFEKTE 780
  781 MKYDSTGMFH WSPAKSLEDC ILDRNQAAMT VLNGHVVVCL FADPDSPLIG LRNLVMPLRA 840
  841 SNFHYHELKH VVIVGSVDYI RREWKMLQNL PKISVLNGSP LSRADLRAVN VNLCDMCCIL 900
  901 SAKVPSNDDP TLADKEAILA SLNIKAMTFD DTIGVLSQRG PEFDNLSATA GSPIVLQRRG 960
  961 SVYGANVPMI TELVNDSNVQ FLDQDDDDDP DTELYLTQPF ACGTAFAVSV LDSLMSTTYF1020
 1021 NQNALTLIRS LITGGATPEL ELILAEGAGL RGGYSTVESL SNRDRCRVGQ ISLYDGPLAQ1080
 1081 FGECGKYGDL FVAALKSYGM LCIGLYRFRD TSSSCDASSK RYVITNPPDD FSLLPTDQVF1140
 1141 VLMQFDPGLE YKPPAVRAPA GGRGTNTQGS GVGGGGSNKD DNS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle