YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125772859, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHLSTSERV CSKTPIPSSG EGSPPLLARR SKLSGDSNQG RRGEDSSPEL PPRGKLPLPK  60
   61 SLSSMKSAAS VVPEDLVDHV PKDQIDLEVY TRNFQGDKVL GYQFQAPLKW DKVIQISLLH 120
  121 IVAVVCLLTY PLRDLNPYTT LWSFFVGGVA GFGVTAGAHR FWTHRSYTAN TVLRSILMIC 180
  181 YCVAGQNTLY DWVRDHRVHH KYSETDADPH NANRGFFFSH VGWLMMLKHP DVLRRGRQID 240
  241 MSDVLADPVV RFHQKYFIPL KIFLCFILPS AVPVYCWGES WHLALIQQCL FRYVSSLNFT 300
  301 WSVNSAAHLW GSRPYDKRIM PSENIYVSLV AMGEGWHNYH HVFPWDYKAA ELGNYGVNFT 360
  361 TMVLDAFHKL GWAWNMKQPS KELVRRTLEK YGDGSHASQM GAGPEGAVAG SSQMVGHFHY 420
  421 AEVPDPELEY DAESSSTESA KLDENENESE RQKKGKKVA

Type	Start	End	Confidence
Cytoplasmic	1	112	0.96
Transmembrane Helix	113	132	0.91
Non-Cytoplasmic	133	139	0.80
Transmembrane Helix	140	162	0.90
Cytoplasmic	163	256	0.60
Transmembrane Helix	257	278	0.80
Non-Cytoplasmic	279	289	0.62
Transmembrane Helix	290	311	0.46
Cytoplasmic	312	459	0.54