YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54637384, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNSSFFDE HLTMLYANLM NNYVPEYFKS FQYTPWVFSL LGSVVIGLSG IFPLLIIPSE  60
   61 EKLAKNGYKD PAESKFLRVL LSFAVGGLLG DVFLHLLPEA WEGDHQSSSG ELGDSHPSLR 120
  121 SGLWVLAGIL IFTIVEKIFS GYTNADEENP QPKCVEIANC LLRRHGGKLP EGGTSESCGG 180
  181 ACDIEDVDKV CFLREREQKS KEQKEQPRKV AGYLNLLANS IDNFTHGLAV AGSFLVSFRH 240
  241 GVLATFAILL HEIPHEVGDF AILLRSGFSR WDAARAQLLT AGAGLLGALV AIGGSGVTSA 300
  301 MEARTSWIMP FTAGGFLHIS LVTVLPDLLK EEERKESIKQ LLALVFGIAL MAVMTTLFEH 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.92
Transmembrane Helix	36	57	0.94
Cytoplasmic	58	75	0.95
Transmembrane Helix	76	97	0.92
Non-Cytoplasmic	98	117	0.91
Transmembrane Helix	118	135	0.86
Cytoplasmic	136	275	0.83
Transmembrane Helix	276	298	0.89
Non-Cytoplasmic	299	306	0.76
Transmembrane Helix	307	329	0.87
Cytoplasmic	330	337	0.92
Transmembrane Helix	338	358	0.92
Non-Cytoplasmic	359	360	0.87