YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125772627, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.95
Transmembrane Helix	87	109	0.87
Non-Cytoplasmic	110	116	0.70
Transmembrane Helix	117	135	0.90
Cytoplasmic	136	149	0.65
Transmembrane Helix	150	176	0.74
Non-Cytoplasmic	177	183	0.62
Transmembrane Helix	184	206	0.88
Cytoplasmic	207	212	0.74
Transmembrane Helix	213	231	0.75
Non-Cytoplasmic	232	241	0.65
Transmembrane Helix	242	259	0.95
Cytoplasmic	260	277	0.81
Transmembrane Helix	278	300	0.85
Non-Cytoplasmic	301	351	0.90
Transmembrane Helix	352	374	0.81
Cytoplasmic	375	426	0.88
Transmembrane Helix	427	446	0.87
Non-Cytoplasmic	447	452	0.62
Transmembrane Helix	453	472	0.92
Cytoplasmic	473	486	0.79
Transmembrane Helix	487	513	0.86
Non-Cytoplasmic	514	635	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSEDNGHT NGAFNEDSEV SLDIPTNTLY HTSRDCIVQE EQSGESESCL EASRGCCRSL  60
   61 WQNIFRKKTL YKRFPILTWL PQYKKDYIFG DLVAGISVAL TVIPQALAYA GIAGLDLQYG 120
  121 LYACFLGCFI YIFIGSSKDV PIGPTAISAL LSFQIAGGSW QIATLLTFLT GIIEILMGAF 180
  181 RLGFLIDFVS GPVGAGFTSA VSLIIFSSQM KDFLGIQTSG NTFLQVWISI VNDIHNISWP 240
  241 DFILGLICIT LLLSLRALAS CSVGPKEGKS SGQSLLTGIF WTVGTARNAL LVCGTAGLGY 300
  301 WLSVSGQEDL VRTVGFVPKG MPSFQPPPFH IDAVVNETTG EVLVDGQSFW DMVSTLGSGL 360
  361 IVVPLIALLE TMAVVQAFAD GKPTDATQEL IASGVCNVAN SFVQGLRSNG GIARGAILNA 420
  421 SGVRTQLSNL YTSVIVIIAL LYLTPCFYYI PKAALASIII AAVVFMVQYR VIKPMWHSKK 480
  481 TDLIPGLGAF FACLVLPLQL GILVGIGINV VFILYQAARP KLRIETLATS SGLKYLMLTP 540
  541 DRCLIFPSME FVRKVINKQG VKSTLPVVID CTHIYGADFT AAKVISTMVM DFAQRQQPLF 600
  601 FYNLQPRVAQ VFEGLNKDLV VIYDLTTLHS KLAEK