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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125772514, gi...
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEFFFKFG YAFLTITLII MIWMSLARAS MLDREMQERR YPPCTYNVMC TCSKSSTDLG  60
   61 IVHCKNVPFP ALPRMVNHSK VFMLHMENTG LREIEPYFLQ STGMYRLKVS GNHLTEIPDD 120
  121 AFTGLERSLW ELILPQNDLV EIPSKSLRHL QKLRHLDLGY NHITHIHHDS FRGLEDSLQT 180
  181 LILRENCISM LQTHSFTGLL ILETLDLSGN NLFEIDPNVF VDGMPRLTRL LLTDNILSEI 240
  241 PYDALGPLKS LRTLDISHNV IWSLSGNETY DIKASTKLNL DNLHLEYNHI EVLPPNSFKY 300
  301 FDTVNRTFFD GNPIHTLKED AFKPARIREI YMRYCGLTNI SPQAFDSLVN SLQILDLSGN 360
  361 NLTKLHHKLF NNFDVLRVIS MRDNKIKIQK PTETFNAVHY TLLKLDLSGD RNDPTNLQTL 420
  421 RNMTRMRNMR SLSISRLGTS SVGPEDFKDF GVELEDLQIT RASLSAIQSH AFKHVRGLKR 480
  481 LDFSENGISS IENDAFHEIG HSLISLKMSH GYSGSALPAE PLRHLTSLQE LDFSNNHIST 540
  541 MSDTSFHFLK NLRMLELHDN RIEQVLKGTF QGDIHTKLEE ISLRFNLLNS ISQHTFFDLE 600
  601 ALRKLQLDDN KIDKVERRAF MNLDELEYLS LRGNKLNSLA DESFQNLPKL EILDMAFNQL 660
  661 PNFNFDYFDQ VGTLSNLNVN VSHNQIKQLM YNSSWSGRNE HGGMYHTNIK ILDLSHNNIS 720
  721 IIHPGYFRPA EISMTHLHLG YNSLMNTTRD VFGNMPNLQW LDLSYNWIHE LDFDAFKNTK 780
  781 SLQLVYFGHN YLSDIPQDIF KPVLGLRIVD FSHNHLRGLP DNLFYNGGME KLDVSHNMLL 840
  841 KIPSSSLSSL AALTLCELHL SNNFISTIHS MDLSNKFRSL RYLDISYNYL LRIDDAVFAT 900
  901 MPRLAVLDLS HNRDLKVMDK SFMGLENSLI KLGMENVSLS TVPEIRLKYL REFRLGYNEL 960
  961 PSIPQELAHN MSNLRMLDLS NNDLTNVPLM TQSLPHLRRL MLSGNPITSL NNNSFDGVNE1020
 1021 DLEMLDISNF RLHYFEYGCL DSLPHLRSLK LTAYSHLEHF NIPHLLRHHY NIRELWIEAP1080
 1081 QPFTRIVKKG SGPTQEMQTL QLGNPTDLQR EMEGHLPSKL TNLTFSGPQF ASLNEHILKG1140
 1141 MRSPYLYMQL FNTSLQALPP NFFKHMGRVR NISLDIRYQN RNLKKIPNPN TGQVPYLPNS1200
 1201 VFLTDLKMSH TDLNCDCDLG WVEFWQRKRR QYICSSQTWT DTVFRTFMNS PCQVYGRHNC1260
 1261 DDHDDDLRET RCENKGGQQL MEALKFDLEC GWDNANCREA AFVVVVVCVA MVFWM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle