YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220673371, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKPSSKQQ SEEDLLLQDF SRNLSAKSTA LFYGNALIVS AIPIWLFWRI WHMDLVQSAV  60
   61 LYAVMTLVST YLVAFAYKNV KFVLKHKVAQ KREDAVSKEV TRKLSEADNR KMSRKEKDER 120
  121 ILWKKNEVAD YEATTFSIFY NNTLFLLLVI VASFFLLKNF NPTVNYILSI SASSGLIALL 180
  181 STGSK

Type	Start	End	Confidence
Cytoplasmic	1	29	0.96
Transmembrane Helix	30	51	0.90
Non-Cytoplasmic	52	57	0.82
Transmembrane Helix	58	77	0.94
Cytoplasmic	78	137	0.93
Transmembrane Helix	138	157	0.93
Non-Cytoplasmic	158	163	0.82
Transmembrane Helix	164	183	0.91
Cytoplasmic	184	185	0.80