YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125811851, gi...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKWVQLNNQ VAGRDKLARL IQYASRAMWD SLEVCNSSPA LVDNFKTVEY ILSTFRKLLR  60
   61 FGKCLDVFYG TLRTIHYPDL TIRATLTLGK LSQSLFLFAD HFLWLARTGL TKVDVKRWSN 120
  121 IANKYWLFSI IMNLCRDFYE IVRVLDLHKS GCRSGISRCK LPTSINSPQD FKRLALQSYV 180
  181 IIQGHKDIAV DTVKNICDFF IPLTALGYTN LTPRTIGFLG AISSLAGLWA LLEPKAKLMP 240
  241 A

Type	Start	End	Confidence
Non-Cytoplasmic	1	214	0.67
Transmembrane Helix	215	232	0.72
Cytoplasmic	233	241	0.45