YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125811277\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPVVFFVVV TSLYGVLYFF DRFFKSCMHY PYDAFLKNTG LSVNFMSLHW HTNAFNRALL  60
   61 RWGSAGNSCT RNFMVTSFNV GVLLTFSLLP IGIILLIITI FSGGEADSSA PYASAMPVQL 120
  121 EILLPGVNLP LEEIGYYITT LVLCLVVHEM GHAMAAVLED VPVTGFGIKF FFCLPMAYTE 180
  181 LSNDHLNSLR WFKKLRVLCA GIWHNFLFAG ICYLLISTIG ITMSPFFVYN EHVIVTELTR 240
  241 KSALRGERGL KVDNLITQVN GCPISSVESW HSCLYSSMKK RAGYCVSADF IQLNDESSAI 300
  301 SHHSVDGQLQ CCDELNPNVS CFEVVEDVNG DVPVELPQHV CLNVRRTLEE VTEHCTSGLC 360
  361 SEGFCLRPLM RNITAIMTFK RLNLNSEKLP PVIYVGHPWD VSRTVEVSAF VPRYRFLSAA 420
  421 WPDAWFLLLK YNVVFSIGLA LVNAIPCFGF DGAHITSTVI HSFLVGKVDQ YAKRDLISVI 480
  481 ITSVGSLLFG LALLKVAWLS FLRPLM

Type	Start	End	Confidence
Cytoplasmic	1	79	0.66
Transmembrane Helix	80	101	0.93
Non-Cytoplasmic	102	133	0.65
Transmembrane Helix	134	152	0.71
Cytoplasmic	153	160	0.46
Transmembrane Helix	161	181	0.59
Non-Cytoplasmic	182	201	0.60
Transmembrane Helix	202	229	0.74
Cytoplasmic	230	427	0.72
Transmembrane Helix	428	455	0.70
Non-Cytoplasmic	456	475	0.62
Transmembrane Helix	476	499	0.89
Cytoplasmic	500	506	0.58