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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54636946, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSRCLSVS GDRLLLLLAA TLAIALVQAE RDFNVNDSQV PVIEPKDVPA YKQDPYVTEL  60
   61 MGCQNQQNEI VLSLLLKKHD WSELTATKRA HVQAKLAKFF AIPKEFISLD SVSKRELRTM 120
  121 HKLAMRKGGK GNKNIETLNR RLGRASFMIG CGPSYFVMGE PIAKQIAHQV KDGTIGALTE 180
  181 ENFGLWFIWR KELKTRSHRR RRQSEGSGAD DDDYEYEDEG EEAIEPSTEV PAVTTHAHRH 240
  241 HHGVPNANDF ELSSFPPIED VEDATTIPTT AAAAGATTAR TSSSSEIDSH VVESTATHRT 300
  301 ISSKEGEADA ISTPNNNSSG SGSSSVPPST VATTTPATPE ATSTVSTFSS TDYVEPQPEN 360
  361 SVPIIKTRLQ KLAVTSGKAF TMIVPEDTFW DAEDQGNLRL ELTDKDGHEL KSNSWLQFNA 420
  421 DKRELYGLPL DDTVSRWQYR LSATDSGNAT VTETVEISVQ QHRAVRTINH EISILVKINE 480
  481 KHGHNIDWQL KLINALARTL DDDSSSAVVV REIRQTPQDP HSAIFVYFNE TLPTSDCPEK 540
  541 ELSDLVSRLD AQRLSDLVQP LLGIKSITGQ LIGSCQKDLT KVKPTMQMAK NVPPMPRNQV 600
  601 DRVNASVGQL LVFKVPPDTF YDANDNDLTL TLKSKEHKEL STRHWLQFDS KNQEFYGIPK 660
  661 SGDTGSEEYL LVAEDSGGLS AHDALVVVVS HPPKKEFGAF FKAYLAIRHE NFNAELQRKF 720
  721 VERIARVNGD ATTNQIQIRS INIHHDSDGT IVNFYNTSLY KHHNRCPEKE LAATRSVYLV 780
  781 GDSLRDSVKR ALGPELNLTN FSVAPFGSCH HAENIDITNE FVPTRTEEPS QKSTFSEEYL 840
  841 ANFILPAVII LVMIVLASIV ACCLHRRRHK SGKMELGDEE ERKSFRAKGI PVIFQDEYEE 900
  901 KPEIGNKSPV ILKDEKPPLL PPSYNTSNMN GDNDVDEYVP PPAVVVGGRE VRGKSPATPS 960
  961 YRKPPPYVSP 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle