YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125811135\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	166	0.50
Transmembrane Helix	167	189	0.70
Cytoplasmic	190	236	0.78
Transmembrane Helix	237	257	0.87
Non-Cytoplasmic	258	267	0.68
Transmembrane Helix	268	286	0.91
Cytoplasmic	287	293	0.73
Transmembrane Helix	294	316	0.87
Non-Cytoplasmic	317	331	0.82
Transmembrane Helix	332	352	0.87
Cytoplasmic	353	365	0.80
Transmembrane Helix	366	388	0.81
Non-Cytoplasmic	389	407	0.76
Transmembrane Helix	408	429	0.73
Cytoplasmic	430	458	0.89
Transmembrane Helix	459	477	0.94
Non-Cytoplasmic	478	482	0.69
Transmembrane Helix	483	503	0.91
Cytoplasmic	504	520	0.83
Transmembrane Helix	521	539	0.92
Non-Cytoplasmic	540	552	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIAKLKAT PLPPLKNILN VAVQTARQQI PERKEYEQPP GSSQQRPHQP HQNFANGHGQ  60
   61 AMDTGMDGGD QTTEMSSNPF RNTGNWSNEG DGEGEGDYKN EYQSTTFNEY DGRYQQTDGF 120
  121 RQGSIASEGS SFVCEGEGGG GCKIDEYQAA WNVTNAIQGM FIVSLPFAVL HGGYWAIIAM 180
  181 VGIAHICCYT GKVLVQCLYE PDPTTGQMVR VRDSYVAIAK VCFGPKLGAR AVSIAQLIEL 240
  241 LMTCILYVVV CGDLLAGTYP TGSFDSRSWM LFVGIFLLPM GFLKSLKMVS TLSFWCTMSH 300
  301 IVINAVILGY CLLQIGDWGW SKVRFSIDME NFPISLGVIV FSYTSQIFLP TLEGNMTDRS 360
  361 KFNWMLDWSH IAAAVFKAGF GYICFLTFQN DTQQVITNNL HSQGFKGMVN FFLVIKAILS 420
  421 YPLPYYAACE LLERNFFRGP PKTKFPTIWN LDGELKVWGL GFRVAVIVST ILMAIFIPHF 480
  481 SILMGFIGSF TGTMLSFIWP CYFHIKIKGH LLDQKELAKD YLIIALGVLF GVIGIYDSGN 540
  541 AMINAFEIGL PF