YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636900, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPRFLDRNY PLEKHLFFVT RYSFGLLGLR FGEAKSQSWI SLAWLVFNFV NLAHCCQAEL  60
   61 VFGWHYLRIS PVDAMDAFCP LACSLTTLFK LGWMWWRRQE VSALMERIRL LTEEQAGRGN 120
  121 RRSNGARRSY YLMATRFGML VFTLGSITTS AFVLRSLWEM WARGLADFKF DMPFRMLFPE 180
  181 FAHRMPWFPL FYLYSTWSGQ VTVYAFAGTD GFFFGFTLYV AFLLRVLQLD VSDSLQLVKN 240
  241 PSPRDCDLCC RRLANIVDRH NEIALIVRRF SGIMAAPAFV HFVSASLVIA TSVIDILLYS 300
  301 GYNIIRYVVY TFTVCSAIFL YCYGGTEIST ESLSVGEAAY GSAWYAWDRE TRRRVYLIIL 360
  361 RAQRPITVGV PFFTPCLPVF TAVIKFTGSI VALAKTIL

Type	Start	End	Confidence
Cytoplasmic	1	39	0.80
Transmembrane Helix	40	61	0.79
Non-Cytoplasmic	62	73	0.75
Transmembrane Helix	74	94	0.88
Cytoplasmic	95	131	0.93
Transmembrane Helix	132	154	0.89
Non-Cytoplasmic	155	200	0.87
Transmembrane Helix	201	223	0.85
Cytoplasmic	224	277	0.85
Transmembrane Helix	278	298	0.88
Non-Cytoplasmic	299	303	0.79
Transmembrane Helix	304	325	0.84
Cytoplasmic	326	365	0.84
Transmembrane Helix	366	388	0.66
Non-Cytoplasmic	389	398	0.62