YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636877, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHLPVPLYG FAAFFMIFWF GTWMVHLIAI CYGKYKLHKK SCKLPSESSP LPGVSILKPL  60
   61 MGVDPNLQHN LETFFTMDYP VYELLFCVED KDDPAIKLVE GLLEKYPRID ARLFVGGSDV 120
  121 GVNPKINNIH PGYMAAKFDF VMISDSGIKM KNDTLLDMVQ NMSEKHALVH QMPFTCDREG 180
  181 FAAIFEKVFF GTVQSRIYLS ADVLGINCHT GMSCLLRKAV IDQLGGLRAF GCYLAEDFFI 240
  241 AKGVTKLGWK MRISNQPALQ NSGLCDIGSF QARLIRWAKL RVAMVPTTIL LEPLSECMIL 300
  301 GAFAAWSASV LFNWDPLVFY MVHILCWLLS DWLLLSIVQH GSMPFHKFEF VIGWLFRELT 360
  361 GPYLFLHALW DPAIRWRTRT FKLHWGGMAY ELNTPADCQT APLQPQPAPT LPTDSGQAVA 420
  421 EVTPAATFCT GAKHRLLVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.96
Transmembrane Helix	8	30	0.89
Cytoplasmic	31	282	0.98
Transmembrane Helix	283	306	0.86
Non-Cytoplasmic	307	316	0.77
Transmembrane Helix	317	338	0.86
Cytoplasmic	339	439	0.63