YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636866, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHPKLGQAL RVAYYHALVF GLMGTTLHIR GNSRLIRVEK VSWIYLAYSL VISGGLLLDT  60
   61 YFMVPKAILD GYIHHNIVLQ WNFFLMLGLR IVTIFCSYGL VWLQRRQLVK LYVDSRHLWR 120
  121 NYRRLLKRMV DQQDLEKLQL SLTSLFWRQT IVVYGALLCS SVVQYQLLSV INRQSLTALC 180
  181 ARLSQLLHVL AVKMTFYALL LMLDHQFQAV LLALRTLQRR KGGKQKAKDL RRIAALHLDT 240
  241 YHLARHFFGL YDVANAMLFI NMCVTTTSIL YHAVQYRNQS IPSDGWGNLF GSGLVLFNLC 300
  301 GTLMLMEKLD RVVSSCNVGP ALRQFCDLRK ISKELQMEVH RNRLAYKICG LVEVNNSACL 360
  361 SYIGSILSHV IILMQFDIRR QQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.88
Transmembrane Helix	12	31	0.90
Cytoplasmic	32	40	0.91
Transmembrane Helix	41	63	0.90
Non-Cytoplasmic	64	80	0.87
Transmembrane Helix	81	102	0.92
Cytoplasmic	103	145	0.95
Transmembrane Helix	146	168	0.75
Non-Cytoplasmic	169	193	0.71
Transmembrane Helix	194	214	0.70
Cytoplasmic	215	252	0.77
Transmembrane Helix	253	274	0.85
Non-Cytoplasmic	275	284	0.76
Transmembrane Helix	285	305	0.88
Cytoplasmic	306	382	0.64