YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125810956, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLRFYFELSR LIGLCNLHYD PPHHRLVLNH VPTVVYCLVL DVAYVLIMPF AFSLLVGNIY  60
   61 GCKQLGMFDT VYNVMGQAKL FSMLVLIGGV WLRRCRMEGL GNEYLKLLFH FRSAALNHVR 120
  121 RLCLWKVALT SSRFVMLIQI LLTPNSLMHC KYTLDRTGVA PFYLAAMGYA LIMELMVTYV 180
  181 DVTVYMIHVS GNWLISSMTE RLQEMIDDVE VLPKRLGRPR DMGLRQILSA WLLLWHRCLH 240
  241 LDDLLKQLRD IFQWQILFNL GTTYIFSIAT VFRLWIYIDY SKDFSLWTCL IMLFVFLAHH 300
  301 CEVMMQFSIF HTNTSKWRKL QEQLQHLWFL NQSQNGAGLT AEVVLSRKV

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	55	0.85
Non-Cytoplasmic	56	74	0.83
Transmembrane Helix	75	92	0.94
Cytoplasmic	93	121	0.94
Transmembrane Helix	122	143	0.84
Non-Cytoplasmic	144	161	0.82
Transmembrane Helix	162	189	0.72
Cytoplasmic	190	255	0.73
Transmembrane Helix	256	277	0.92
Non-Cytoplasmic	278	283	0.55
Transmembrane Helix	284	309	0.78
Cytoplasmic	310	349	0.58