YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636815, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.71
Transmembrane Helix	19	37	0.76
Non-Cytoplasmic	38	151	0.95
Transmembrane Helix	152	174	0.92
Cytoplasmic	175	184	0.82
Transmembrane Helix	185	203	0.95
Non-Cytoplasmic	204	209	0.73
Transmembrane Helix	210	231	0.91
Cytoplasmic	232	239	0.87
Transmembrane Helix	240	263	0.91
Non-Cytoplasmic	264	269	0.85
Transmembrane Helix	270	289	0.91
Cytoplasmic	290	360	0.96
Transmembrane Helix	361	381	0.95
Non-Cytoplasmic	382	388	0.81
Transmembrane Helix	389	407	0.85
Cytoplasmic	408	416	0.67
Transmembrane Helix	417	436	0.96
Non-Cytoplasmic	437	441	0.64
Transmembrane Helix	442	462	0.85
Cytoplasmic	463	471	0.62
Transmembrane Helix	472	492	0.93
Non-Cytoplasmic	493	499	0.68
Transmembrane Helix	500	521	0.95
Cytoplasmic	522	600	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDEVLKEV GSFGLYQKVI ICSVLLPAAL PCAFHAYSQL FIAATPQHWC RVPELEPWTQ  60
   61 DYVQLVKNLS IPRNRHGAYA ECSMYARNYS DIVRYLEYRP PIDLIRQEAE NLLKLQPETA 120
  121 RIVPCQHGWH YDKSIYSSTV VQEWSLVCDR SYLVTLALVI FGVGGLLGNY VFGYLVDMWG 180
  181 RRPSFYAYLL LEIAACAASA FAWNFPVWLG LRFVVGLTVP AILASPYVLA IELVGPDRRV 240
  241 FCTIVSNIAY SLGLVILAGV IYIVRDWREL SLAVSMPLLM LFSCFFLLPE SPRWLMAVGQ 300
  301 TKRATKILKV IARVNGVRIT RDFVERLQHR LVTTQAVESS ASTHYGILDL FRGTNMRRKT 360
  361 LIITLIWFAN TSVYVGLSYY APALGGDEIW NFFLAGAVEL PTYLLLWPGL SYFGRRWILF 420
  421 ISMLVGGVAC VATFLFPKIT LLLYCVGKMG ISSSFVVLPL LASELYPTVV RGLGMSFSSV 480
  481 VAMIGPIVIP IINHMGQQML ALPLIVMGAL LIVGGFASLL LPETRNRNLP QTLEEGEAVP 540
  541 LSILLCCCVE SGNKKSPPEN RRRVIPEVGA AVYHRVESPS SGPATCKVVC SICKKEMRTL 600
  601