YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125810739\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMLNQILSI NNGGAYGGGK AGGAFDPLTF AMKPQVVIRA LCWLFSVVVF GCISSEGWTE  60
   61 KEGKEYCLYN GDGMACKYGN MVGVFGFLAS MGFMGGEFLF ERMSSVKSRK RYVMADLGFS 120
  121 GLWAFMYFVA FLYLWSQWSS SPPPPLGIGA GSMQTAIWFC LFSIATWALC ALMAYKRFLI 180
  181 GAGDEFTSAF ETDPANVVHQ QAYGYAMDND NDQYSASPFG QGQQGGMEPQ QQAGMEYQQP 240
  241 TY

Type	Start	End	Confidence
Cytoplasmic	1	35	0.94
Transmembrane Helix	36	58	0.84
Non-Cytoplasmic	59	77	0.93
Transmembrane Helix	78	100	0.88
Cytoplasmic	101	111	0.96
Transmembrane Helix	112	135	0.88
Non-Cytoplasmic	136	154	0.82
Transmembrane Helix	155	175	0.89
Cytoplasmic	176	242	0.99