YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54636735, gi|...
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSLPLLLLLA SLCPSATPAS TPRSPTPQRM RNFNGNSGNS FTRHPPSAGD LVPESLLLED  60
   61 LQQPHGQLIN LTRHHDGDVF HTSGISSACN ADTCIGLSSG TAGLLRLSND GNGHANDGLG 120
  121 QDTATASLAG GQLELLARRL KMQQNRGRSP QPEAEGNEDG GCTCRCLPYL RAYREDLGIC 180
  181 VDDIHECSLS PFVSGASSEK IPFVFLPLRG QIIYPSREIS FANIHTPVCA VTGAQYLGSN 240
  241 GWSDLRNPID TDYPFRMFRD EGRSFVQWLG EPELRQKMQG RLIVVHLVCR DMTLALNATT 300
  301 SHGKGEPLMP PRNVHSPCVA FRVNGSPVKY AHNVPEVFFQ PANSTTLASI SDGMTMREYV 360
  361 VIGICSLLLG LIYVASVFLY LYMKKRKRHS SRHSLDNLAN EINYPKNDQV TYGAPFSRVG 420
  421 SIYSANSMGL GNGNDSNGRP NIAGLKEDLG IVKNNPLLQH FPQLGEREHQ SGFASDISNS 480
  481 NSECEMEEKI KTSVLVHPQL GKSPKTTNSC NSGQENASQE SDDFLQDKEC LPTENVAVIE 540
  541 DLMSEEKMEN LRAMVSGNVR KKLYFNPAYF EPHLLAEPPQ AAIEFLQKIR EVIAIAKYKM 600
  601 AAKRYQPSLN IIPEEQQPES SSSPSMYQLS LQQNLSTKSG MGDKRNSIEQ WLQSVPNSDS 660
  661 PQQQKTLDRP TPTAAKKNSG SPTKGSPTKG SLRREITAPK ERPPPPPMQK AVKAEEGPTS 720
  721 SPSPKPASSR SGPEPEPGKT NANSYESFSS YSMAANVYGF AETGGEIYNN PKFMLADSPA 780
  781 GSMRSSSSRS KSLRKRSDVL DQFAAANSTP TSLTSFDRQH YNMLRNMKPA EIIYDSLKRE 840
  841 YGAHIPTPDY DSTIEKKIKD IYSSTQSSIP SVPTPDYSSL SRKSLKQFQP DSPIYRRKSP 900
  901 QYLIVDYETD SLERLEPSKR KSSHSSSSPS SDVSSQLSPS LSTALPLEEE LEISHTVYDR 960
  961 LNGFRKEGDL KKRLAGKNPQ LVQQRQKEAA ARIKYDTPFR GSMTIEVEHE PPSDLERTDS1020
 1021 DQFEPDTLDR KPKKQSFCDI NAWDGHGRQQ QQMSSDSYVD SDYNQINSLP DLSRGSPVSS1080
 1081 QAIKPRTASF ILKSSHSFRN LREIYESPLV AQESCKCERK PTAEEEGRIL TLEAKHSRRQ1140
 1141 RGMQSSPTHS VVDVAKVNKT TITISSPKPV EKQQDKSRAL GHRNPSKANQ HYCPPLVQSK1200
 1201 RPLPPPPPSQ TAGESQTQDE DAYSMHSEVT EVTGVTSEFE NSCNNTMSSA ISATTEERGY1260
 1261 AKQSKEIHGK SQSHKQSHLE ADYDAMYNKK INSLRNDYSL TKYLNRRKSH QREEASEPAQ1320
 1321 ERKDNPEPEF TSSNNAKSLK DVDLNQFDAL SISSRSNRSS GHLSERTKEM YRNAGVPVGI1380
 1381 AYPQRAAANS SGNANQSSVQ TVYRCEIEPA QLTAGMQIAI GLKDRAKKAK DLKNAWRKFV1440
 1441 TMAANKFSPS QSPAPTYGTK NAAGFLEALD RDEGIATIIE NAAQSAGMGH GPGSQNYYEQ1500
 1501 RFGQLDSGYM STDSTELYKR NVYDRYNFKM MTGRGQIIRV DTIEDNEEES GPNDSRFEDL1560
 1561 EHMVSPGHSR RSPDNVAGDD LSDADSDKTL TRSHSRSHSQ ANSQELNVRG STTTMSSYSS1620
 1621 EEEAGRGHST CCGSSETDEE TNAEDMWESG AESIETHSVL YKMIRKS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle