YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125810046\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFKLIRPAP LTEKVGSRDG CIYLFRAMKF IGWVPPKSGV LRYVYLFWTL MTFVWSTTYL  60
   61 PLGFLGSYMT QIKSFSPGEF LTSLQVCFNA YGSSVKTAIT YSQLWRLIKA KDLLDKLDLR 120
  121 CTSVEEREKI HRVVALSNHA FLIFTCVYCT YAGSTYLSSV LSGRPPWQLY NPYIDWRDGR 180
  181 GNLWLASTLE YVVMSGAVLQ DQLSDTYPLV YTLILRVHLD MLRERIQRLR TDEAMSEAEN 240
  241 YEELVNCILD HKIIIMFCDT IKPVISGTIF TQFLLCGIVL GLTLINVFFF SDLWTGIASF 300
  301 MFVITILLQT FPFCYTCNLI MEDCDALTHA IFQSKWVDAS RRYKMTLLYF LQNVQRPIVF 360
  361 IAGGIFQISM SSNISVAKFA FSVITITKQM NIADKFKDE

Type	Start	End	Confidence
Cytoplasmic	1	42	0.76
Transmembrane Helix	43	65	0.84
Non-Cytoplasmic	66	138	0.41
Transmembrane Helix	139	160	0.69
Cytoplasmic	161	263	0.61
Transmembrane Helix	264	289	0.81
Non-Cytoplasmic	290	293	0.56
Transmembrane Helix	294	317	0.77
Cytoplasmic	318	357	0.63
Transmembrane Helix	358	381	0.54
Non-Cytoplasmic	382	399	0.42