YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125809905, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRHLAKMP RGGTTTARYE EDPDNAWNCC SWCEYLLIVI LSTILLVGVL VLTLFWVMFY  60
   61 RDGFAWSESP KQQFNLHPIL MIAGFVTLSG FSILIYRLCR CVKHIYVKLI HMFFHAIAIP 120
  121 CIALGFLSVF DSHEALQKVN FYSLHSWLGF VTMGMFVLQF VIGFFSFLVM LCCENKTYSC 180
  181 RSAMVPIHAS LGLANFWLAI ATSVTGLIEK ERETVAETNV SAENKLIEHY ITSAIGITLI 240
  241 FIGIIVTFAV RRSNAPASAK VYVTERI

Type	Start	End	Confidence
Cytoplasmic	1	34	0.99
Transmembrane Helix	35	58	0.92
Non-Cytoplasmic	59	75	0.93
Transmembrane Helix	76	98	0.90
Cytoplasmic	99	108	0.84
Transmembrane Helix	109	130	0.91
Non-Cytoplasmic	131	147	0.91
Transmembrane Helix	148	171	0.90
Cytoplasmic	172	183	0.78
Transmembrane Helix	184	201	0.89
Non-Cytoplasmic	202	228	0.85
Transmembrane Helix	229	250	0.94
Cytoplasmic	251	267	0.97