YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125809427, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.97
Transmembrane Helix	62	79	0.94
Non-Cytoplasmic	80	106	0.86
Transmembrane Helix	107	128	0.93
Cytoplasmic	129	155	0.93
Transmembrane Helix	156	175	0.96
Non-Cytoplasmic	176	182	0.86
Transmembrane Helix	183	202	0.92
Cytoplasmic	203	210	0.81
Transmembrane Helix	211	229	0.72
Non-Cytoplasmic	230	266	0.72
Transmembrane Helix	267	290	0.90
Cytoplasmic	291	300	0.66
Transmembrane Helix	301	324	0.69
Non-Cytoplasmic	325	345	0.51
Transmembrane Helix	346	380	0.71
Cytoplasmic	381	426	0.76
Transmembrane Helix	427	450	0.86
Non-Cytoplasmic	451	524	0.80
Transmembrane Helix	525	548	0.87
Cytoplasmic	549	558	0.82
Transmembrane Helix	559	582	0.90
Non-Cytoplasmic	583	605	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDTAKGVI NNGYELDHRE LEIPNSEPFK EIPREDRNLP QQGEDGKGFF YNNPKMGRIV  60
   61 KISVYILLHV VVVGYFSYAT YHYNDITNYE CNWSSDNPLC GINFCSGYGM LLLLLVFVYF 120
  121 GLFYYFIFKP KVGIWLHREY LKPAAQKWHN FSRTRAVSLA SIALLLVFLA IFLYFETKDE 180
  181 PQKLVSMVAP CFFILCGYCF STKRSAIKWR VVITGITCQF LLGIICIRWE VGRNIFDCLG 240
  241 KKVATFLDYA KDGAQFVFGD FLIQTEVFAF AILPVIFFFS FFISILYYMG AMQWVVVKLG 300
  301 WILQQLLGTT VCESVTAAAN IFLGMSESPL LIRPYINKLT KSEIHSIMVS GFATVSGTVL 360
  361 AAYLSFGASA AHLITSSVMA APATLAISKL YMPETEESQT TSESIELEKS QDSSLLDAAS 420
  421 SGASNAVPIV LGIIANIVAF VAFVAFLNGI VNWLGYLVGV DDIDFEWIFS KLFIPLVWAM 480
  481 GVPSQDCNLV AKVVATKTII NEFVAYERLG AYIVAGDITA RSGGIATFAI CGFANPSSLG 540
  541 ILIGSLSVMA PHRRSTITAV AFRAFVVGSI VCFVSASFAG ILLQEGDERA NYDRIIQKLA 600
  601 SRNAT