YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636271, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNRWGNLLLT ISRCLAVAPT ARQEGRFARW IHCFWCLVLL GYVWTGCIWK CIVFDAEMPT  60
   61 IEKLLYLMEF PGNITITGFL VYHAVLNCPY ARDVETQIHL LIGRQDFGVA QRLYQKHGKR 120
  121 TRHLLVQTIV FHGACIVVDI VNYDFNWWTT WSSNSVYNLP ALMISLGVLQ YALAVHLLWL 180
  181 LKSHLCHCLE QLQKRRRLPQ GIVNLDARYD RFFASLVDAG GCSSLVLEEL RATYTSIDRL 240
  241 HRQLLDKFGL FLLLNFGNSL CSFCEELYMV FNFFERPQWA AGMLLFYRIL WLVMHGGRIW 300
  301 VILAVNEQLV EQECQLFLQL NQMEVCGSHL ERTINRFLVQ LQTSIGQPLL ACGVIDLDTL 360
  361 AMGGFVGVLM AIVIFLIQIG LGNKSLMGVA LNQSGWIYI

Type	Start	End	Confidence
Cytoplasmic	1	30	0.90
Transmembrane Helix	31	53	0.89
Non-Cytoplasmic	54	64	0.85
Transmembrane Helix	65	86	0.76
Cytoplasmic	87	122	0.91
Transmembrane Helix	123	143	0.90
Non-Cytoplasmic	144	158	0.88
Transmembrane Helix	159	180	0.88
Cytoplasmic	181	248	0.96
Transmembrane Helix	249	269	0.66
Non-Cytoplasmic	270	278	0.56
Transmembrane Helix	279	302	0.74
Cytoplasmic	303	358	0.60
Transmembrane Helix	359	382	0.86
Non-Cytoplasmic	383	399	0.49