YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSKKPVWLL FKVLELVLSF CCCYIHWRCF QDEGIPHIFL LCATYGGSSI ICLLAIIGMF  60
   61 YAEKPTMQLE SAFSGLFGTL HLVTIFVHMY LALHGNKLVY LKSQGANWHG YYICCRDNAT 120
  121 VALYATAVYY LHCTFALDLM LTHRRTKFVE CPDRTVRKQP KHPQRSMRPL KLYFISKGVD 180
  181 NYLNRFRWFH LLTANMLMST QPSQKTLDVS SNSNEAFELT PQLNIN

Type	Start	End	Confidence
Cytoplasmic	1	7	0.95
Transmembrane Helix	8	28	0.95
Non-Cytoplasmic	29	36	0.80
Transmembrane Helix	37	61	0.91
Cytoplasmic	62	71	0.86
Transmembrane Helix	72	92	0.92
Non-Cytoplasmic	93	119	0.87
Transmembrane Helix	120	139	0.61
Cytoplasmic	140	226	0.71