YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636239, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDSYFSIQR RALEIVGFDP STQRLHMRRP LWAGLLILSL VSHNWPMIVY GLQDLSDLTR  60
   61 LTDNLAVFMQ GSLCTLKFLA FIVKRRRIGA LVHRLHGLNQ EACASPLQRE KILRENRLDM 120
  121 YVSRAFRNAA YAVTVASMIA PMLNGLIAYL TEGVFRPTTP MEFNFWLDER QARFYWPIYA 180
  181 WGVLGVAAAV WLAIVADTLF SWLVHNVVAQ FQLLKLLLAD KERQQAADSD SHLAECIRRH 240
  241 RLALELAREL SAIFAEIVFV QYMLSYLQLC MLAFRFTRSG WSSQVPFRAA FLVTVFIQLS 300
  301 SYCYGGEYLK QQSSGVALAV YSGCDWSQMP PARRRLWQMM IMRAQRPAKV FGYMFDVDLP 360
  361 LLLWVG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	49	0.94
Non-Cytoplasmic	50	64	0.77
Transmembrane Helix	65	83	0.88
Cytoplasmic	84	129	0.91
Transmembrane Helix	130	151	0.84
Non-Cytoplasmic	152	174	0.82
Transmembrane Helix	175	200	0.78
Cytoplasmic	201	249	0.80
Transmembrane Helix	250	272	0.66
Non-Cytoplasmic	273	284	0.58
Transmembrane Helix	285	306	0.70
Cytoplasmic	307	366	0.65