YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125809193, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.17
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRQWWFWW KRITAWTWNR LLALLPTVLA GFKSYSSRLR EMAEIAGAEA GVLAISLIVN  60
   61 RQLHTLERSI WLVVVLSSIY AAIMLSGLQY ERYLNSPTVI SVDRDYRGWN GSLPAVTLCY 120
  121 YDHIDSFKAN EYIQDVWNVS IIDEDYFYFM DFLYAVVNAT ASNYAELAKF AEDERFDQVD 180
  181 LYELIQRVDR PFEQVISSFD ANFKVHVQMV MTERGSCYAI NSPMSSVLSG KPIVYEEMEQ 240
  241 PLSCQYGKQQ CYIRMDLYES TGVLDVHSPY EVSATEANIV ALHKSDEITA SFKVLETVAS 300
  301 KNLYELSVAQ RKCVFNNEET SNLKIYSKSL CLARCRAVMA LEMCNCVPFF YQFVEGPGCN 360
  361 PAGFECLLDF KWPIWALHIC KCPSTCTEIE YTMQTVKKSS WGVKNNDEVA SSETATSSFR 420
  421 WDLIPPKVRM RRDVVYSFED LIVSFGGALA FFVGVSVLGL VEMGHVLFHN MLLDISTLIR 480
  481 WVYTQARRHR VIHREVAEAS TSRHRHSQQR LSLADTAELP PFDYVN

Type	Start	End	Confidence
Cytoplasmic	1	15	0.65
Transmembrane Helix	16	35	0.88
Non-Cytoplasmic	36	41	0.59
Transmembrane Helix	42	60	0.65
Cytoplasmic	61	68	0.51
Transmembrane Helix	69	90	0.82
Non-Cytoplasmic	91	146	0.55
Transmembrane Helix	147	161	0.17
Cytoplasmic	162	435	0.62
Transmembrane Helix	436	460	0.75
Non-Cytoplasmic	461	464	0.59
Transmembrane Helix	465	484	0.62
Cytoplasmic	485	526	0.90