YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125809015, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.68
Transmembrane Helix	50	75	0.86
Non-Cytoplasmic	76	81	0.54
Transmembrane Helix	82	101	0.66
Cytoplasmic	102	120	0.64
Transmembrane Helix	121	142	0.57
Non-Cytoplasmic	143	149	0.57
Transmembrane Helix	150	170	0.91
Cytoplasmic	171	184	0.66
Transmembrane Helix	185	205	0.85
Non-Cytoplasmic	206	214	0.64
Transmembrane Helix	215	237	0.90
Cytoplasmic	238	249	0.64
Transmembrane Helix	250	272	0.90
Non-Cytoplasmic	273	283	0.64
Transmembrane Helix	284	305	0.73
Cytoplasmic	306	325	0.56
Transmembrane Helix	326	348	0.69
Non-Cytoplasmic	349	417	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLVYKESH ILSAQQLRKL SEHKYSCFSA SLLDPLLQPW WNWLVSQTPL WLAPNLITIV  60
   61 GLILNIVTTL ILICYSPNGV EAPPRWTCAL CALGLFVYQS LDSIDGKQAR RTNTSSPLGE 120
  121 LFDHGCDSIS TVFVALSACI SCQLGHYPNW LFFQCFCAIA LFYCAHWQTY VSGTMRFGRI 180
  181 DVTEAQFSII AIHLVSAILG PEFWLTKIGI GDIQLWYGPA ITTIVCGLLS LTYVFSVIKA 240
  241 GGVGKNGSTV AGTSVLSPSI PLTLVVLPAL IIAQKSPENL FTEHASVYIM AFGMVAAKIT 300
  301 NKLVIAHMTK SEMEYLDWSL LGPSLLFLNQ YFNCIVPEIW LLWFMLIWGT QDLLRYCSQV 360
  361 CLEICQHLRI NLFRIPYNPK AGVPHPATAS VSSQSNLGSS ADKNGGTSHR KYKSKPH