YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54635872, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLESPKFIEN DLYNGSHAFT WLADMVGLSV DLVNFLLCQI SALFLASLFR SMLHPSKVSS  60
   61 KLRHTFALSI GLAFGYFCFG QQAIHIAGLP AICYIVIRTQ DPRIVQRAVL LVAMSYLLCV 120
  121 HLMRQLYDYG SYALDITGPL MIITQKVTSL AFSIHDGFVR EEEDLTKAQQ YHAIRKMPSA 180
  181 LEYFSYVWHF QSILAGPLVF YKDYIEFVEG YNLLKRPSTN GSLDNGKREL VLEPSPTKTV 240
  241 IRKVIGSLVC AFIFMKFVKL YPVKNMKEDD FLENTSMAYK YWYAMMATTC IRFKYYHAWL 300
  301 LADAICNNAG LGFAGYDKDG NAKWDLISNI NVLSFEFSSN MRDAINNWNC GTNRWLRTLV 360
  361 YERVPKRCGT LLTFALSAVW HGFYPGYYLT FATGAVTVTA ARMGRRLFRH RFQSTQLTRM 420
  421 FYDILTCLIT RIVMGYATFP FVLLEFMGSI KLYLRFYLCL HIISLVTIFI LPQYIRGERR 480
  481 DSSPKSSDSV AASGSVRDSS PTRVPQAARA ALAGGNDLNE DEDEDKHAKC KDNTPQLLLT 540
  541 EQQQQRIEQQ NNVILQSQTS HHPPKPPTNA RDAISVPHDQ CEMDQLSSKL KEKFEAETKN 600
  601 IEEFIDKTVT DTVSGIVEFK NDLMRDIEFP KLKLPGGSAI STPLDAAATS VGLRKRNISS 660
  661 VHENGQCTDA SGGDTAEHAA EENSAAFLKK EIEVINAVVQ QANVLPAVLS NGHAK

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.71
Transmembrane Helix	27	49	0.84
Cytoplasmic	50	64	0.66
Transmembrane Helix	65	86	0.83
Non-Cytoplasmic	87	103	0.61
Transmembrane Helix	104	123	0.78
Cytoplasmic	124	294	0.66
Transmembrane Helix	295	314	0.37
Non-Cytoplasmic	315	379	0.55
Transmembrane Helix	380	404	0.78
Cytoplasmic	405	420	0.86
Transmembrane Helix	421	444	0.84
Non-Cytoplasmic	445	452	0.82
Transmembrane Helix	453	475	0.88
Cytoplasmic	476	715	0.93