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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CDKAL_DROPS
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLEQDFPG NDIDDIEDLI SAEDVKPQER YQNKKSVTVR AKKRVQIKPE TDAEEKPTPR  60
   61 PTIYESVIPG TQKVFVKTWG CAHNNSDSEY MAGQLAAYGY KLSGKDEADL WLLNSCTVKN 120
  121 PSEDTFRNEI ESGMSNGKHI VVAGCVPQGA PKSDYLRGLS VIGVQQIDRV VEVVEETLKG 180
  181 HSVRLLQNKK VHGRRVAGAP LSLPKVRKNP LIEIISINTG CLNQCTYCKT KHARGDLASY 240
  241 PPEEIVDRAR QSFAEGCCEI WLTSEDTGAY GRDIGSSLPE LLWKLVEVIP EHCMLRVGMT 300
  301 NPPYILEHLE EVAKVLQHPR VYAFLHVPVQ SGSDSVLGEM KREYCRKDFE HVVDFLRERV 360
  361 PGVTIATDII CGFPTETEED FEETMTLCGR YRFPSLFINQ FFPRPGTPAA KMERIPANLV 420
  421 KKRTKRLTDL FYSYEPYAQR VGEMYTVLVT EISHDKLHYV GHNKSYEQVL LPMRDNLLGT 480
  481 RVHVRITSVS KFSMVGEILD DERDWTRCAK KQEAPMELTI TGRNRDKLIQ RYVGIALVVG 540
  541 SLAFLLQLLI RFL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle