YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125807490, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	292	0.78
Transmembrane Helix	293	313	0.77
Non-Cytoplasmic	314	321	0.63
Transmembrane Helix	322	342	0.87
Cytoplasmic	343	362	0.74
Transmembrane Helix	363	386	0.77
Non-Cytoplasmic	387	453	0.79
Transmembrane Helix	454	472	0.86
Cytoplasmic	473	481	0.76
Transmembrane Helix	482	503	0.91
Non-Cytoplasmic	504	525	0.85
Transmembrane Helix	526	549	0.89
Cytoplasmic	550	561	0.80
Transmembrane Helix	562	584	0.89
Non-Cytoplasmic	585	629	0.89
Transmembrane Helix	630	654	0.89
Cytoplasmic	655	667	0.82
Transmembrane Helix	668	688	0.93
Non-Cytoplasmic	689	702	0.81
Transmembrane Helix	703	724	0.93
Cytoplasmic	725	740	0.93
Transmembrane Helix	741	764	0.89
Non-Cytoplasmic	765	780	0.87
Transmembrane Helix	781	802	0.90
Cytoplasmic	803	815	0.81
Transmembrane Helix	816	838	0.88
Non-Cytoplasmic	839	847	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSGVNSSN ESVLRTQFSS SIELEVDNAK PSSETELGSS DVDVALPDSS RRSSAVAFLN  60
   61 YMRECKRRFG SKHLGQGFAN AATKRWRAMS PEHRARYRRS EYRSASTIKP SKSSLLCRED 120
  121 NELDSTAALS VVPSGFSLDE VDCDMKRKSK RSCSKPKRKK SACGKRRRRK SACKKRKSRK 180
  181 SKKSCSKPRR RKSRKAKCKV RYGNLSKNLP THRCQLRMIP SCFRDEITAP VRHEPDKRVW 240
  241 VWHCRTALEV STYPSISTVI SKSRHLKAHS SRESNLKMEV TKATKPTEQW DNGLEFLFSC 300
  301 ISLSVGLGNI WRFPYIAFQN GGGTFVIPYL IALLVIGRPV YYLEIALGQF TGRGVVKAFD 360
  361 MAPLLKGVAV GQVLATGASI TYYSSIMALT LRFLVASLGS ELPWSRCWEK WGSDCHDGSI 420
  421 VNATGKMSPA QLYFEREILH EVPNIDNGLG MPNLDLIGCL AVSWLIIEAV LIRGIKSSGK 480
  481 AAYFLGVFPY VVLLVLLFRA VTLPGAMDGI IYFFKPQWRQ LLDPLVWYAA VTQVFFSLAI 540
  541 CFGTVITYAS YNNFNRNVYK DIVIITTMDS CSSIIAGCIT FGILGNLAKE TGITDIGSVV 600
  601 KGGAGLAFIS YPEAIARFEY VPQHNYLKMF AVLFFLMLFV LGIGSTVGMG TCILRVVRDH 660
  661 FGPRTTPTWA LASCLTVVGF GVSIVYMTPG GQFILNLVDF YGVSFTALIL AIGELVAVAW 720
  721 VYGVHRFCAD IKFMMGIETG WYWRLCWLFI TPGLMAAVLF YMLLDMSPLT YKGVAYPALA 780
  781 HVFGWFLAAL GLVQLPGWAC YALYKQRHRP GSFLQLFHFA FGSAIACVSI SAFSDIIIVC 840
  841 KLAIKME