YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125807455, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHLLVQIYF GYALAIGITS NRMVGSIFKQ TCFSRCYALV VNIATLVLTP PLLWESRNGF  60
   61 RGSHSYPKLI LVTFHVRYLV AYAVILYTVL SRGFRDRALK EVQPLLIKLM HEEKRYGRQR 120
  121 LRRSLLLPLY LKFFMAIYMC LTIWIFHFYS GPEINWKTIA KIIFLGNALN ILEIVPMGYF 180
  181 LALWHIASGY EFVNQRLDAI MASTPVDLEE LQNIWSLHAA LTRTAISVNK IYGLQMLANR 240
  241 IDNFIYGVIN AYWGTFFTFD ADTNFVWVVI GSVTYWIRCV DSYLIDHMSD LVMRYQSSPK 300
  301 HAWSERCWSG EINSYVTYVS SSKLQLRTCG LYQENRSLWF ETISSILYYY IMLLQFHLVM 360
  361 R

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.64
Transmembrane Helix	8	25	0.78
Cytoplasmic	26	32	0.85
Transmembrane Helix	33	54	0.90
Non-Cytoplasmic	55	70	0.91
Transmembrane Helix	71	90	0.91
Cytoplasmic	91	127	0.93
Transmembrane Helix	128	148	0.94
Non-Cytoplasmic	149	162	0.85
Transmembrane Helix	163	187	0.77
Cytoplasmic	188	337	0.75
Transmembrane Helix	338	359	0.67
Non-Cytoplasmic	360	361	0.50