YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125807345, gi...
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQTLSYSSS SPSPSPMPTP AGTPHPPATT HAPTHTHPRP GSTGSDPNNR FQPAIIPVDY  60
   61 SYHTHTHSHP HSHSYGHTTM APSTYTSTQS FIRQPTASTV QELGSERDSQ PYSSLFGDPV 120
  121 PPPSQVEEYF GTAAFETLRS SSLEIPSSEE DALVAAVALN ALMGNEARVR QRIFSNIPYT 180
  181 RTPRASLIPH LQPPDIQILP NSSGGSSSEQ LGSPNYRLLA PDDILNKPDM YDLANPSEES 240
  241 QYMTRLDFDR EEERTQTPSR TAGKQSVSTM TSDDHHHGLL SDSYSGRDWF RPAPQHFPEF 300
  301 TRIPKLRPSS KNIMSMKQEE VPLSPLATMI QDMNSSSSGG DERVAPDREK QSTMQDMDVI 360
  361 LSPKQYLEQQ LERMSAVSER QLLEDYSPPS PPPADPPPSC HQSSRRDTEE SVCSRPPTMK 420
  421 REMSPIIIKD SISVGGDYRV DQPRPHKKTA FTILTVRSPQ TSPAYSPARR AAARRHASIQ 480
  481 STSTTSSMAT KPPILPRRKT PSDSRLPELP GYLAHSAYPS QQQPQPQPHP LHTTDDSPRP 540
  541 SVQFNMSGRH SRSKLATPSK GILQQRDSLT SSIDTYTPRA QRRRSMAPSS PQQMSYGQRI 600
  601 KSMESLPLIT DPYRSAIPRL HYSTMDLGKE AAAFPPGALP RPLKPNHNPT RKQRGLLKVI 660
  661 NREEALAHIP PRSNWCSLDD LALAPSPRAS FDVGHAQGRR RSSSTSPERR SSTQTASDRR 720
  721 SSNLSSITAT TSDFSFRRPS LATLPASRLR RKSVQAPIPG RSPRRQSTYQ RDPKPPPHGK 780
  781 HGKIAKPSSL SPILGTPNKD SSSGQSPTHG SSIIGHRESS LFGHHESSLI GHRAAAVDTQ 840
  841 SEVSTRRDSL SRIPIRSRPG SRVESRSSSP SKDFVAMIPT ASGRTSRAST SRSPSRAMIH 900
  901 SRTPSRESAR PGESRSVSRG PPSRASSRME QAREQANSRS NSRANSRLSI NSSLRSSSVS 960
  961 PVTMARNKTI RGTTPQPSRR KSISLSPTSG MIGRRKSISP GAITQARRMS MSIRGKPENP1020
 1021 ETLSRRNSRS RIPTRQSGKM ESKSPPSSSK KRSKSPEKTK GTPAMTPKGT RAGKVPPKGS1080
 1081 PKAKPTSKQP ASAKPRTESL KAVKTAERLS VVRREQGTGK KPAPKAPSST AKEAKAEKGK1140
 1141 PATKSSAQGQ PAAPPRTKSQ QMKAKPPGGA TMEAKRPPAP TATKAQGIVH EKGANGGDAT1200
 1201 TNMTPLAAQV GNVVLQAAEA IPAVTSEVTV PSTPGRRGQG ANMSKLVRMS SRLSLLSQKN1260
 1261 RADSPLNRKV ATVPEIAQEP EEAATHGSLM KSNDAGSLPA AILEKSQKTL ENIQKTVTEA1320
 1321 TDEIHKTISE NLTDLKTLEN DMGLTADGPP TPTPTSGTML AKPSDSESRT GTADGGNAPQ1380
 1381 SSAEQAKSPF TATQPIEAAV SVVHPDERAT ISSVPEVECE SSDLPTVLDV SESELGGHVM1440
 1441 PTPESGADFK VDAKRRSPDG QGGSAAGSGG MAKTSSQEFL EEKDNNANKK GLCRCCSSLF1500
 1501 MPCRRSRCSR CCYRRERNPS AEDQPVLWSA NSSATTATNV QVIDETKSKK KKVTDWLKSS1560
 1561 CCRSCRKKHP PANTDKPEPP SVKQEASMST GPKRGGKCGL CLSKVFCCRS VNKVDDTGNE1620
 1621 TELKKCCFCI PYRRNRSKPK GSSVSWRDQD PELGIKPTDT SVLEGASEAS MTSAAADTPA1680
 1681 TLPKENRVAN RMLADRASEP RRPDTRRKLH NDLVEHASKM KGAIPVLPLY LAWFCAFCNV1740
 1741 VFPGLGTLLS GLLCLCVGIP RFSQYDSARA RIGSFIINII VAVSQFCCVL FCFVGWGWSI1800
 1801 WWGTIMLKCA RKLSKIKKVE RLELEEEQRQ AQLAATAAVC EFCKLYYFGC IKMSHLVKME1860
 1861 NGQSQTIQEM LGCIERYNPD HLKTLEAYIQ DQAKNNTYDL EANLAVLKLY QFNPHMLNFE1920
 1921 ITYTILLKSL TNLPHTDFVM AKCLLLPQQM KDENIQTIID LADILERADF TLFWQRAEVN1980
 1981 RTMFRHISGF HDSIRKFVSH VVSITFQTIK KDLLKELLGG IEDSTLESWI KRNGWKHQGQ2040
 2041 DLIVVAMQDD KIKTKNITEK IEFENVGALM AQCL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle