YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125807128\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.92
Transmembrane Helix	56	76	0.89
Non-Cytoplasmic	77	86	0.78
Transmembrane Helix	87	109	0.92
Cytoplasmic	110	114	0.77
Transmembrane Helix	115	136	0.79
Non-Cytoplasmic	137	140	0.58
Transmembrane Helix	141	160	0.87
Cytoplasmic	161	169	0.70
Transmembrane Helix	170	191	0.85
Non-Cytoplasmic	192	213	0.76
Transmembrane Helix	214	233	0.96
Cytoplasmic	234	241	0.71
Transmembrane Helix	242	265	0.88
Non-Cytoplasmic	266	279	0.71
Transmembrane Helix	280	299	0.95
Cytoplasmic	300	311	0.77
Transmembrane Helix	312	346	0.79
Non-Cytoplasmic	347	373	0.52
Transmembrane Helix	374	395	0.93
Cytoplasmic	396	403	0.47
Transmembrane Helix	404	425	0.91
Non-Cytoplasmic	426	441	0.48
Transmembrane Helix	442	464	0.87
Cytoplasmic	465	469	0.42
Transmembrane Helix	470	487	0.35
Non-Cytoplasmic	488	506	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRSISETEH SESDLSSGAT TESNSSDYEQ EDRHHSSRVH DSTTAKRDNV MLPRPWASSG  60
   61 GWMCFLMPLA LASRFLNAPP CNEQVHLHLM LTVTAAGMCV ETLCFFVYFF ADTSILAKCI 120
  121 ISLLPGTFTA LGFGFCLGTS WLFAVVAGFL MIAGYQHFYV CMMRGFSRCF TYGEASILFQ 180
  181 GLMLFVISAT YRLYELCSAD ADAKTFSDFH RLNLIMLNAL MWLLILCVLV IAVPRLRGPI 240
  241 PFYLLLGLLV VAVTSAPVTS PVPIVALLQF IFRDPKRLQI IGFYLVLVLL TGATVTWQLR 300
  301 HTVQANTRVR KIFHLLIVLV FVPGVLFQCT LLYLATGIAL AAFVVLELMR LLEIPPFSDR 360
  361 LTDAFHSFRD EKDAGVLALT PFCLLIGCSM PLWLTPCPCS GKDTLILLSG ILAVGVGDTA 420
  421 ASVVGSKMGR NMWGNSSRSL EGTIAFVMSI LLSVWLLEAT GLLAMTQAKW FATIFAAINS 480
  481 ALVEAFTDQV DNLVLPLVFY ILVGLA