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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54635375, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHESISQISP KSSSQGNDRL SIESTIADSI NGLAERESTL QDDNENETRA ERVERSASPI  60
   61 LHDQHNQGNG GKAGGRPNDV HFPQDQEKDV SAGRYFHYNI KPTGTYDSQE EQPEQTQRIR 120
  121 AGKTLSGSSS SSSLEQSFLG KGDLRPLTSG SPIRPSSTAT SSTGASATQA PHSPRQNGNP 180
  181 DIQDIITGIV KLLNGNVNVH ANTQGVRRPS ASRINNRGPP RISETQNLPP IDYEAQKPGT 240
  241 SMRPPPYPFD RPERPFITGV PIPEQIVPLR PGFVSNRPPW YRNKPRPPIT TSVGGSRRPL 300
  301 PQYKPLPAPQ VLPSPQPQDK LEQQDLLEAQ DDGVPPTDTT YDSEFSNEDA NAQYIEVSDQ 360
  361 DTDATGGGEI DDELQPPPPG PLSTPNPPAT TPTSPKKKHK PKPVSEKKKV PQEEPELPLD 420
  421 GGYTTIVETS SVVHTVMGGM SSTYVPMSMD SSEALDLDPS TEEVIFMTAN RTPGLETGAT 480
  481 SHLTTSGIST AIAATPSLAI EPPPAPYHPR PGIVLDDPEF KPGGRPRPPA GNQRPAAPPP 540
  541 QPNPPIQPTR QHLPPGYGEI FDVTLSAIQG PGPKGSGSKQ TINIKPYGSY GAGGQGGGQR 600
  601 QDDIIVSASG DEGFVSIDGK RTYINLFGDP TDPPAGATSP ATRLPQLPGA GTSPGGGGVD 660
  661 LGGGSVAGSG SASSASAPPN AVTQSSGGYV VPETEVVDLQ GQSQSTGTAA GASTTNAGPT 720
  721 RPHYRQRPTP PPVRIDTCIV GDDSTCDQAQ HERCKTDSGV SSCHCRPGYS RRKHREPCRR 780
  781 VISFHLGLRV DRIYEHRIVW DHKLMDRHSE PFGQLSYESI RALDSAMSMT PYSDEFMEAK 840
  841 VNNIYRGDPN LGGNGVYVNM TLKLDESVET LRPNLRSDVQ KHLLGVLHRR NNNIGNSVLY 900
  901 VSSPEGAVSA LQDLDECQSP DLNDCHPGAT CSNTWGSFRC ACEAGLRDPW ADQPQRAGRE 960
  961 CQACLDSFCN NHGSCSYNDE GSQICTCDSS HYGAQCEIDG EVLGVAIGAS VAAIIIIVLT1020
 1021 LVCLIMWSRR WQREQKNAMG SPVFGYMNTA PLKSAGLPQA GYQVTLEDRM RWAQIADVMA1080
 1081 QTNHYGAEPI GPTRPSSAMF AYPNLGAMGM GMGTLGGMSL QSTMQMHPSA TLAPPVPLPR1140
 1141 RLGLGPRSNG MRTLENSSSS EEEDRADLLG RNFQVPRPKS RSNGSIANQS GIYYDVDYEP1200
 1201 SGNGIGNSSV DHLYGSQNPS VTHSSGNNHI PGPQGIPMST YTSGRAPSSY YMK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle