YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54635318, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	133	0.99
Transmembrane Helix	134	155	0.93
Non-Cytoplasmic	156	174	0.88
Transmembrane Helix	175	197	0.90
Cytoplasmic	198	204	0.88
Transmembrane Helix	205	226	0.88
Non-Cytoplasmic	227	232	0.70
Transmembrane Helix	233	255	0.92
Cytoplasmic	256	261	0.86
Transmembrane Helix	262	282	0.93
Non-Cytoplasmic	283	290	0.80
Transmembrane Helix	291	312	0.90
Cytoplasmic	313	687	0.99
Transmembrane Helix	688	708	0.90
Non-Cytoplasmic	709	721	0.92
Transmembrane Helix	722	744	0.92
Cytoplasmic	745	751	0.89
Transmembrane Helix	752	774	0.91
Non-Cytoplasmic	775	781	0.72
Transmembrane Helix	782	803	0.92
Cytoplasmic	804	812	0.78
Transmembrane Helix	813	835	0.90
Non-Cytoplasmic	836	845	0.88
Transmembrane Helix	846	866	0.91
Cytoplasmic	867	889	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPTTASSV SNVSNNNSAE AANNNSQQNG GAYQALPESP VPAPANTPLN RAIKHDLFPE  60
   61 VTFCNLSAEE LADGVGHSRV VRTSIIAIDG EGNLTCLMNS SQVKKRKRLI SNESGDSIDS 120
  121 GSTEKKAPKM PDGGYGWVVV FASLVVSLIA DGLSFSFGLI NAELLEYFGQ STSKTAWISS 180
  181 LFFSVPLLMG PIWSNLVDKY GCRKMTIIGG LVSAVGFAMS SFCNSIEMLM VTFGIISGLG 240
  241 LGIGYVTAVV SIAFWFDKKR TFATGIGASG TGIGTFVYAR LTSYLIESYG WRGATLILGG 300
  301 TMLNACVCGA LMRDPDWLIE ENRLESRSQS VTTFSNSSVC LEEIKKLLDT GITKEAVLDS 360
  361 LVTKNNTEAN QQIDDPLDTG LKRYRSEIFL PTFLSIQELD SICEVKSLSR RSLRHKEGVE 420
  421 APSRENLLSM SSGAGGYPPS TAIIGSPDDT LMGGIAQEAM EAAKKSYLAS IETLSPSEKR 480
  481 SSPVGSIRSS DEGYLTQKHA SSRYSLNENL FMAKHTTPSI SNLKVNGLRH NSVDILSEDM 540
  541 HCYYKDETFA LLDHGRRPGP TVIAMPDREQ PTANSEVALR RARLDSITGI RRLSRSKKPS 600
  601 QHRSNLRRNI SIRNSNFLKD MRIHRNSIHY RGAMLNTHRY RLRASSCPNI YRNSMTTIAK 660
  661 EEEDTWYESF VDTMKSIFDF SMFLDLKFAL FNLSTLFLFI WFIIPYLYLP DYMKQYNYEV 720
  721 NVSAVLISAV GIAQTVGMIG LGYVGDQPWM NINICYSLCM LVCGASVFCM PMLMTSYNGL 780
  781 MAMCVIFGFT FASSFSFTPS ILVSIVDLDD FTCAYGLVLL VQGVGMIAGP PIAGLIYESV 840
  841 GRWDDSFYYA GIFIALSGVC SYMIEFCEKK APKESDSDVS ETKKAQLLH