YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125806563\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASNRSTQV ALCISAISFL LFIIAFSTPY WLVTDGRLEK PRFTNLGLWE VCFNDFQDIH  60
   61 RFYDNPFNGC MWVFEEEYYI IHDFLLPGFY IAVQLFATLC FVMCLIGLPL TLAFLRTSRD 120
  121 DDRYVVLLLT IGTCQVLGSI FGFIAVVIFG AKGDSRDWMP GWQNNDMGWS FALGVVGAVL 180
  181 LLPGGILYMI EARRERYKRL NEISNREVSE YGDDYYQHQA NVATTPTAPS PSQSYFAPEP 240
  241 SRPRRPQPGR TPNTQPQGGI QTDI

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	31	0.90
Non-Cytoplasmic	32	90	0.96
Transmembrane Helix	91	115	0.89
Cytoplasmic	116	124	0.93
Transmembrane Helix	125	149	0.93
Non-Cytoplasmic	150	167	0.94
Transmembrane Helix	168	190	0.94
Cytoplasmic	191	264	0.99