YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7493792, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDDSKNPP QVPDGWVAKF DEEYSTWYYV DLKTKKSQWD APAGTRFDSK SAGDDVPPPA  60
   61 YSPTESKSRS NAPSGNQPRP AASNPNTQRD YQQGPPQGQY YQQGPPQGQY YQQGPPQSQH 120
  121 YQQGPPQGQY YQQGPPPGQY YQQGPPSGQY YQQGPPQGQY YQQQQQQQQQ KQSRFGGGAG 180
  181 SMALGVGGGL LGGMLLGNAI NSWEDHERME GYQDGYQDGY DNGGDYDGGD FGGGDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	174	0.81
Transmembrane Helix	175	199	0.87
Cytoplasmic	200	236	0.77