YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25308886, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.98
Transmembrane Helix	83	104	0.83
Non-Cytoplasmic	105	119	0.84
Transmembrane Helix	120	140	0.90
Cytoplasmic	141	149	0.77
Transmembrane Helix	150	169	0.96
Non-Cytoplasmic	170	175	0.84
Transmembrane Helix	176	197	0.63
Cytoplasmic	198	208	0.59
Transmembrane Helix	209	231	0.79
Non-Cytoplasmic	232	238	0.74
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	362	0.90
Transmembrane Helix	363	383	0.82
Non-Cytoplasmic	384	405	0.85
Transmembrane Helix	406	428	0.90
Cytoplasmic	429	448	0.84
Transmembrane Helix	449	469	0.95
Non-Cytoplasmic	470	475	0.86
Transmembrane Helix	476	498	0.85
Cytoplasmic	499	512	0.78
Transmembrane Helix	513	535	0.88
Non-Cytoplasmic	536	543	0.78
Transmembrane Helix	544	565	0.95
Cytoplasmic	566	586	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLDFVVSP VQTKVEINDQ NNEDFIPGTL NIYSLEVDSE DENVSHYDAS SRPKVKTKGN  60
   61 IILFPQPSNS CNDPLNWSKW RKLSNFFIVI FITAFTAATS NDAGSIQDSL NEKYGISYDA 120
  121 MNTGAGVLFL GIGWGTFFLT PASSLYGRKI TYFICIFLGL LGAVWFALVK STSDSIWSQL 180
  181 FVGISESCAE AQVQLSLSEL YFAHNLGSVL TSYIVATSVG TYLGPLIAAF IVQNIGFRWV 240
  241 GWIAAIISGA LLFVIVFCLD ETYFDRAKFT KPFITGIAPF DSSYSNGKSD SKNSIPEKQN 300
  301 SVKIESNVES KEVEQSDDDI ANEGENDPPI SYWKRTAMIT PATNLKGTGF KQYINQLKLL 360
  361 LKVFLYPPVI YSGFCWGIQN ALLTFYLTVE DDQYYDPPYS YGNIAVGLMN IPCLIGAIIG 420
  421 CFFAGTLSDY FTIYLAKRNK GIQEAEYRLW FLLPPAIIAP VGLILFAVGT DQVWSWVPTY 480
  481 IGLGFIGFGY GCAGDVSMSY LMDSYPNAVI ETMTVVAVIN NCIGCVFTFA CSPFINALGN 540
  541 TKTFIILAVI EFVIMASACF FIYYGKRIRI WTKDWYLEFC EARNGL