YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2951670
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.98
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	141	0.81
Transmembrane Helix	142	165	0.86
Cytoplasmic	166	172	0.86
Transmembrane Helix	173	195	0.85
Non-Cytoplasmic	196	203	0.70
Transmembrane Helix	204	226	0.86
Cytoplasmic	227	236	0.66
Transmembrane Helix	237	259	0.86
Non-Cytoplasmic	260	266	0.86
Transmembrane Helix	267	288	0.92
Cytoplasmic	289	344	0.93
Transmembrane Helix	345	364	0.90
Non-Cytoplasmic	365	381	0.80
Transmembrane Helix	382	404	0.90
Cytoplasmic	405	421	0.93
Transmembrane Helix	422	443	0.94
Non-Cytoplasmic	444	451	0.83
Transmembrane Helix	452	473	0.91
Cytoplasmic	474	493	0.74
Transmembrane Helix	494	511	0.90
Non-Cytoplasmic	512	521	0.79
Transmembrane Helix	522	544	0.92
Cytoplasmic	545	557	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYRFLRDSF VGRVVYHLSK HKYFAHPEEA KDYIVPEKYL ADYKPTLGDD TSINFEKEEI  60
   61 DNEGEPNSTQ SSSNNTVVSN TNEDDKIIVT WDGDDDPENP QNWPALQKAF FIFQISFLTT 120
  121 SVYMGSAVYT PGIEELMHDF GIGRVVATLP LTLFVIGYGV GPLVFSPMSE NAIFGRTSIY 180
  181 IVTLFLFVIL QIPTALVNNI AGLCILRFLG GFFASPCLAT GGASVADVVK FWNLPVGLAA 240
  241 WSLGAVCGPS FGPFFGSILT VKASWRWTFW FMCIISGFSF VMLCFTLPET FSKTLLYRKA 300
  301 KRLRAITGNN RITSEGEIEN SKMTSHELII DTLWRPLEIT VMEPVVLLIN IYIAMVYSIL 360
  361 YLFFEVFPIY FIGVKHFTLV ELGTTYMSIV IGIVIAAFIY IPVIRQKFTK PILREEQVFP 420
  421 EVFIPIAIVG GILLTSGLFI FGWSANRTTH WVGPLFGAAI TASGAFLIFQ TLFNFMGASF 480
  481 KPHYIASVFA SNDLFRSVIA SVFPLFGAPL FDNLATPEYP VAWGSSVLGF ITLLMIAIPV 540
  541 LFYLNGPKLR ARSKYAN