YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42564146
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	125	0.95
Transmembrane Helix	126	148	0.88
Non-Cytoplasmic	149	164	0.90
Transmembrane Helix	165	186	0.85
Cytoplasmic	187	195	0.81
Transmembrane Helix	196	217	0.89
Non-Cytoplasmic	218	269	0.83
Transmembrane Helix	270	289	0.93
Cytoplasmic	290	345	0.91
Transmembrane Helix	346	365	0.87
Non-Cytoplasmic	366	381	0.87
Transmembrane Helix	382	404	0.92
Cytoplasmic	405	509	0.97
Transmembrane Helix	510	528	0.94
Non-Cytoplasmic	529	576	0.70
Transmembrane Helix	577	592	0.53
Cytoplasmic	593	636	0.52
Transmembrane Helix	637	659	0.87
Non-Cytoplasmic	660	711	0.68
Transmembrane Helix	712	732	0.86
Cytoplasmic	733	859	0.91
Transmembrane Helix	860	883	0.86
Non-Cytoplasmic	884	900	0.71
Transmembrane Helix	901	922	0.67
Cytoplasmic	923	931	0.48
Transmembrane Helix	932	954	0.79
Non-Cytoplasmic	955	985	0.52
Transmembrane Helix	986	1014	0.68
Cytoplasmic	1015	1058	0.53
Transmembrane Helix	1059	1084	0.75
Non-Cytoplasmic	1085	1104	0.52
Transmembrane Helix	1105	1131	0.83
Cytoplasmic	1132	1175	0.51
Transmembrane Helix	1176	1204	0.71
Non-Cytoplasmic	1205	1211	0.47
Transmembrane Helix	1212	1236	0.80
Cytoplasmic	1237	1244	0.50
Transmembrane Helix	1245	1264	0.51
Non-Cytoplasmic	1265	1310	0.66
Transmembrane Helix	1311	1334	0.85
Cytoplasmic	1335	1402	0.80
Transmembrane Helix	1403	1426	0.89
Non-Cytoplasmic	1427	2040	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSLYIAAFI FNFTLTRANY ASGSRVPVPS DECPAVSLSA AQSAALSWQA AISAARETQD  60
   61 SSKTVNLSAA VSAAPAGSLS QRKRQQYAKS KKQGSSTNSR PPRALFCLTL NNPVRRACIN 120
  121 LVEWKPFDIF ILLSIFANCV ALAVYIPFPE DDSNSTNHDL ETVEYAFLII FTIETFLKIV 180
  181 AYGLVMHQNS YVRNGWNMLD FVIVIVGLFS VVLELITKDR DVSGQSGGKP GGFDVKALRA 240
  241 FRVLRPLRLV SGVPSLQVVL NSIIKAMVPL LHIALLVLFV IIIYAIIGLE LFIGKMHATC 300
  301 YLSATRILAE EDPAPCSLSG HGRHCPLNGT VCRDGWHGPN NGITNFDNFL FAMLTVFQCI 360
  361 TMEGWTDVLY WMNDAMGFEL PWVYFVSLVI FGSFFVLNLV LGVLSGEFSK EREKAKARGD 420
  421 FQKLREKQQL EEDLKGYLDW ITQAEDIDPD NEEEGDQEAK RNPSVXTSEN ESXNTENPGX 480
  481 DEKIFCGPFC RWRCWNRFCR RKCRAVVKST VFYWLVILLV FLNTLTISSE HYNQPDWLTE 540
  541 VQDVANKVLL ALFTCEMLIK MYSLGLQAYF VSLFNRFDCF VVCGGIVETI LVELEIMSPL 600
  601 GISVFRCVRL IRIFKVTRHW ASLSNLVASL LNSMKSIASL LLLLFFFIII FSLLGMQLFG 660
  661 GKFNFDETVT KRSTFRQLPS GLAHCLSGIL TGEDWNTVMY DGIMAYGGPS SSGMLVCIYF 720
  721 IILFICGNYI LLNVFLAIAV DNLADAESLN SAQKEEEKRN KRRKSRSMSI YKRDGDDREL 780
  781 KAPDDQEASR DPAEELADSS EEEEEEEPEV PSGLRAQRLS ELSLREKMPP IPDGSAFFIL 840
  841 SNSNPYVTQV LIRVLCNRLI CHHILSNIII IFIMLSSVSL AAADPIRNFS ARNIVLGYFD 900
  901 YAFPAIFTVE ILVKMTAFGA FLHKGAFCRS YFNLLDLLVV GVSLVSFGIQ SSAISVVKIL 960
  961 RILRVLRPLR AINRAKGLKH VVQCVFVAIR TIGNIMIVTT LLQFMFACIG VQLFKGKFYR1020
 1021 CSDEAKSTPE DCKGTYIVYS MGETAFPQMR ERLWFNSDFN FDNVLMAMMA LFTVSTFEGW1080
 1081 PALLYKAIDS SKENIGPIYN YRVEISIFFI IYIIIIAFFM MNIFVGFVIV TFQEQGEKEY1140
 1141 KNCELDKNQR QCVEYALKAR PLRRYIPKNR YQYKFWYVVN STGFEYIMFV LIVLNTLCLA1200
 1201 VQHXGQSRLF NYAMDVLNMV FTGVFAVEMI LKLVAFKPKH YFADAWNTFD ALIVVGSIVD1260
 1261 IAITEINNTE DSARISITFF RLFRVMRLVK LLSRGEGIRT LLWTFIKSFQ ALPYVALLIA1320
 1321 MLFFIYAVIG MQVFGKIAMV DGTSINRNNN FQTFPQAVLL LFRCATGEAW QQIMLACLPG1380
 1381 KLCDSESDYN PGEEKSCGSN FAILYFISFY MLCAFLIINL FVAVIMDNFD YLTRDWSILG1440
 1441 PHHLDEFKRI WSEYDPEAKG RIKHLDVVTL LRRIQPPLGF GKLCPHRVAC KRLVAMNMPL1500
 1501 NSDGTVMFNA TLFALVRTAL KIKTEGNLEQ ANEELRAVIK KIWKKTSMKL LDQVVPPAGD1560
 1561 DEITVGKFYA TFLIQDYFRK FRKRKEQGLV GGQMLFNTTT ALQAGLRTLH DIGPEICRAI1620
 1621 SCDLQDEGLV DANLHDEEEM VGRNGVVFGN HVSGDQFSSV TQRPLQLPLP QSQPLSDARS1680
 1681 SNSNINNANG PGITNGWHSG RSLVSSLSVC LNLRADGETQ THRPFSSAVG YPTIQVENPT1740
 1741 RDDVSDEDRT SGEFYSGEEF HDEDVMLARD RSYRDVQDTL SDGDSVRDQD MYESVCDDED1800
 1801 EQLISPHPQR SSRRLLRSTA PASHRSAFHF ECLRKQSQDQ IQLRPAASPP QHHQVRMMSG1860
 1861 QESSQSRLSP TRSIRSWVTP PTTPPPYTPL VQATPSASST PGLVHRGFWN TQQASDWSMR1920
 1921 SPPTTSSLLK VPPRLCGHHL QTRSSAHSLV EAVMISGGLG KYAKDPKFVT VTKHEIADAC1980
 1981 EMTIDEMESA ASNLLNVTLG SGGNETGLSP NLRDYSDEET DSSSRRDEDL ADEMIYVSVL2040
 2041