YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7688244
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIKASQAR AVRENPHVSH QFNISSFLGD PFAIGTLSIA LISWIIALAG SIAVAASTSP  60
   61 FPRFSWWTIV YEILLMITLF IVYCLDLVDY YRMFITCAVG IAFVYTTIST NSIVYYEGSK 120
  121 SGAAAAGFIL LSMINLVWVI YFGGDNASPT NRWIDSFSLR GIRPSVLETS MAIARSQRLP 180
  181 VKPSYPYQYQ EDLRSASLPD VHHDDEGEGH SGNMYAPELQ SSTKYVSSTV LNGFENTDHS 240
  241 SSKPNLDVNA QNTATLNTQA TGTFITDTTN ANTDTTMGDT LGLYSDIGEE LNSFPYTAEA 300
  301 LYTYQADQTD AYEISFEQGE ILRVGDIEGR WWKAKKSNGE TGIIPSNYVK LLDGKSH

Type	Start	End	Confidence
Cytoplasmic	1	31	0.65
Transmembrane Helix	32	56	0.86
Non-Cytoplasmic	57	63	0.60
Transmembrane Helix	64	85	0.90
Cytoplasmic	86	92	0.54
Transmembrane Helix	93	115	0.88
Non-Cytoplasmic	116	121	0.63
Transmembrane Helix	122	144	0.91
Cytoplasmic	145	357	0.68