YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHO1_CYBJA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPEYSTSA KSRFDITNLT TDPFVVATWS VAMISWVIAF IGSIVANIEG SFPRFTWWGL  60
   61 VFQLLMLVFL PAVYCFDVVE WYRLFLTCGY SIAFIYTTNS ATNLVWSGGS ATGAASAGVI 120
  121 LLSMVNLIWV FYYGSDNASP INQWIDSFSL RGPKRSSVSP FHNSRPISHD KYSGSENDEF 180
  181 KHSSWNNQRY MSSTALSGLE NVSQGDTLET TPFNSPDHDG LGTNITAGGT NITIDEFPYT 240
  241 ARALYNYQKS PDDENEISFE KDEILKVNDI HSRWWQAKRA NGEIGICPSN YVELIE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	46	0.82
Non-Cytoplasmic	47	54	0.55
Transmembrane Helix	55	76	0.91
Cytoplasmic	77	81	0.51
Transmembrane Helix	82	102	0.72
Non-Cytoplasmic	103	110	0.55
Transmembrane Helix	111	133	0.90
Cytoplasmic	134	296	0.77