YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1903288
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLEKNQTVRK SGSLEALQNA KIHVPKHSDG SPLDYPKLNT YTFVPTTVPP YVLEAQFDKL  60
   61 RLQDKGTVDG NVTDDKNLPK EFKWGQFAST IGCHSAYTRD QNYNPSHKSY DGYSLSSSTS 120
  121 SKNAALREIL GDMCSEWGGE ERLEGVLHSE IGANLEFNTT EERKEWLQYI EKVKDFYYGD 180
  181 NKKNPESPES VHNKVYKSDW VNELNKEREK WRRLKQRKLQ QWRPPLTSLL LDNQYLILGL 240
  241 RIFTGILSCI SLALAIKIFQ NSRSNNTISE SKIGQQPSTI MAICVNAVAI AYIIYIAHDE 300
  301 FAGKPVGLRN PLSKLKLILL DLLFIIFSSA NLALAFNTRF DKEWVCTSIR RSNGSTYGYP 360
  361 KIPRICRKQE ALSAFLFVAL FMWVITFSIS IVRVVEKVSS ITNRN

Type	Start	End	Confidence
Non-Cytoplasmic	1	236	0.85
Transmembrane Helix	237	259	0.90
Cytoplasmic	260	276	0.82
Transmembrane Helix	277	297	0.92
Non-Cytoplasmic	298	316	0.79
Transmembrane Helix	317	336	0.94
Cytoplasmic	337	370	0.80
Transmembrane Helix	371	392	0.92
Non-Cytoplasmic	393	405	0.77