YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19577359
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETSCSHNK RRSDPRNIKR LSGSLQCLAF PLPSFSLQYV RFRNKNFRVA RRCRLDPSFP  60
   61 EFRESDASSL EIIKSPQSLE PPPRLTNGLE KDRRSEDTPH NGTLDASAGA SQDIDNAIAD 120
  121 IGGNSLELGN KLRTLPGVGY SKTPTPATRD WLRPTSRIPV EIFLKGNNHT DFSQPWRGQL 180
  181 EPSEDTEDPL KMKRRRQIWF KRFHRTLLKS PIVPLIFRLT IWCFSLTALA LGGSIQHLSD 240
  241 KYQHPQGPSA LMAIIVDAVA LVYLIYITWD EYTAKPLGLR SPAAKARLIL LDIFFIVFDS 300
  301 ANLSIAFESL STVSGACTLA EINQQISKKN NAICDRQIAL ACVLLVALLA WLITFSISVL 360
  361 RYDTPYSNKC AVLTVFLDNR LVERVAQ

Type	Start	End	Confidence
Cytoplasmic	1	214	0.93
Transmembrane Helix	215	235	0.88
Non-Cytoplasmic	236	248	0.79
Transmembrane Helix	249	269	0.92
Cytoplasmic	270	287	0.88
Transmembrane Helix	288	307	0.73
Non-Cytoplasmic	308	336	0.67
Transmembrane Helix	337	359	0.86
Cytoplasmic	360	387	0.68