YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8247211
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFVALSKK KKYQHKLFPP YLRPSTDTTT TETRFMLSTC LIRNCVFIRP RLSVICFKAI  60
   61 RYQSKKSDFP DYTKINDPKL REIIEGSNFG TEAILKKQRE DQDKKKKMEQ ERKRLEQERE 120
  121 VDRRREEKRA KEESESNKTD NDNEANQHTD DKLAKVNEKL ESNFSKTESG KLRGEDTGTR 180
  181 ETVVETEEEE ELKLKAENKI IATSKDSVDE SDIPNLAKEI NETIQKQIAG LPSQKAKNQS 240
  241 KLAKNLTKYL DSAHDTILTA TRALNDVTGY SAIEKLKKSI ETQEDDLKKA KEKVKQCKIA 300
  301 YGEAILRRSH SQREVNELLT RKHNWSSNDL ERFTELYRND HENEIHEQEA EKKLDEAESK 360
  361 VDGVQLKLTQ SILTRYHEEQ IWSDKIRRSS TWGTWVLMGL NVLLFVVATF IVEPWKRSKL 420
  421 VSAFEDKVKQ VLVGISQENE QILDPIIEKL EPTDGQVPIK TSFDFKFVTN TWHGLKAALV 480
  481 RNYEALMSPE ITNLEFDKFE FELFTMTVAI VAFSMGSLIV SLFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	390	0.77
Transmembrane Helix	391	412	0.92
Cytoplasmic	413	502	0.73
Transmembrane Helix	503	523	0.88
Non-Cytoplasmic	524	524	0.70