YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15485608
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.98
Transmembrane Helix	51	72	0.90
Non-Cytoplasmic	73	87	0.77
Transmembrane Helix	88	112	0.79
Cytoplasmic	113	128	0.76
Transmembrane Helix	129	150	0.80
Non-Cytoplasmic	151	158	0.77
Transmembrane Helix	159	178	0.96
Cytoplasmic	179	187	0.76
Transmembrane Helix	188	210	0.89
Non-Cytoplasmic	211	240	0.86
Transmembrane Helix	241	263	0.74
Cytoplasmic	264	281	0.90
Transmembrane Helix	282	303	0.92
Non-Cytoplasmic	304	334	0.83
Transmembrane Helix	335	355	0.80
Cytoplasmic	356	374	0.88
Transmembrane Helix	375	397	0.88
Non-Cytoplasmic	398	412	0.80
Transmembrane Helix	413	433	0.89
Cytoplasmic	434	453	0.90
Transmembrane Helix	454	473	0.93
Non-Cytoplasmic	474	485	0.76
Transmembrane Helix	486	507	0.90
Cytoplasmic	508	552	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDDVKALG GDLEKAHSIM DQEFVTEKGN GTITEDKQDG QMQRHLKPRH MSMIAIGGTI  60
   61 GTGLFIGSGQ GLNQGGPVGL LLGYSTMGIV VYSVMVSLGE MVTMFPITGS FVHYASRFVD 120
  121 PALGFALGWN YWYCYAITLP TEITAAGIVI QYWTKSVNVA VWITIFLVAS CGVNLFGVRW 180
  181 YGEAEFWCSA VKVIAIVCLI ILGIIIDLGG GPNHDRIGFR YWISPGPFNQ LNGIPGSTGR 240
  241 FLAFWSVFIQ ASFSYQGTEI VALAAGEALN PRKTIPKAIN RVFYRILLFY VGGVTVIGLL 300
  301 VPYNSPDLLG GTGDATSSPF VIAIKSAGIS VLPDVLNAVI LAVVFSAANS DLYAASRMTF 360
  361 GLATDGMAPA IFSRCTSNGL PIAGLILTIG FGLLAYMNVN SSTGTVFQWL ANFSSVTGLL 420
  421 TWWSISLAYI RFYHGLIHHK IDRNTFAYKA PYQPWLSYFS ITMSTLIIFF NGFEVFMSGS 480
  481 WSTSKFVSAY LSIPMFIVFF ITWKIYHKTA FVKIDQMDFV TGKREFDSME QIESEKEVEP 540
  541 VGKFAQFLEW LM