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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6687541
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNASIHEI KAQATVEDVQ EGNSSYTSLD AGNKILEEGR RAGVPAFTFE PDASPEEKTA  60
   61 LVRASMPEGF HHQHKSKAVA IPTDIDNGIP NLDLPFLMNA GRSREKQIDE TIQDSQKEDE 120
  121 ARWIERAGWA PRFGNFTSYS CFEENLTNQQ TLIDGKLDEK FFGEWYHNSA VIIFACISSW 180
  181 LVATLGGGLA WILIIMAICG TYYRTSLRRV RRNFRDDISR ELAMQKLETD TESLEWINSF 240
  241 LVKFWPIFQP VFAETVINSV DQVLSTSTPA FMDSLRMKTF TLGSKPPRME HVKTYPKAED 300
  301 DIILMDWKFS FNPMDRTDMT SKQIKNQVNP KVILEIRIGK ALISKGLDVI VEDMAFSGLL 360
  361 RLKIKLQIPF PHVEKIEVSL LEKPHIDYVC KPLGGDTLGF DINFIPGLES FILDQIHANL 420
  421 GPMMYAPNVF PIEVAQMLAG TPIDQAIGVL AITIHGAQGL RNPDKFAGTI DPYVVVSFNC 480
  481 GLALGQTKVI KENANPKWNE TLYLIVTTFT DNLTFQFFDY NDFRKDKEIG TATLSLDTIE 540
  541 EYPELENEQL EVLMNGKSSG LLTADLRFFP VLEGQDLPDG SKEPPIESNN GIARITVEQA 600
  601 KDLDGTKSLI GQLNPYAVLL LNGKEIHITR KLKRTNNPIW DNGSKEILIT DRKTAKIGLM 660
  661 IKDDRDLATD PILGTHQMKL DDMLTSMEKG QEWFNLAGAK TGRVKMKLQW KPVALSGIGP 720
  721 GTGGYVTPIG VVRFHFKDAR KLRNLETLGK SDPYARILVS GIEKGRTVTF KNNLNPDWDE 780
  781 IVYVPIHSTR ERLALEVMDE ETIGHDRSLG SLAIPTSDYL SSGENGEFLV REPEAHVGHL 840
  841 QKQGKGPPRG TLNYTIAFYP CVNIADPEDI EEENSKEVVE NNISSMESTK LGNSDLIKNQ 900
  901 ENSTVTSVEK KNEQLATVEK EKETKLRLNP DELLKYESGL IIVKIMDVES SKTNVHLEVV 960
  961 MDDMAFPSYS SSLIRSRKTV LNEVGDCIVR ELDFSKITLR IREKKKVQGN EKKDKDQTVA1020
 1021 KLTGNSLELL KQCLNNPTVL KLISDDDEFC IVKVTMKYIP LNMKLDPCES INNMGKLRVD1080
 1081 VLDASHLPSA DRNGYSDPFC RFELNGKDIF KTKVQKKTLH PVWNEFFEVD IVSRTAAQFK1140
 1141 CTVFDWDFGE KSDVLGSTMI DLISLDSFKP QDVNLELDGK SGSVRLRLLF KPSYIVRSRQ1200
 1201 GTSHLTGTFA TPGKIVTGVA GVPLKGVGFA AHGVGKGANF IRKGFKSRKK GDGDMNFETT1260
 1261 DAEGVEKIDD AAGDESARIN SQIAGLSPNS LNPVTHFRSR SFGASSIRSM ALAGSDSSPG1320
 1321 TAAFTILSAT GYPPSTNLMV YLKQLGPKIK TLHRTEHIKT ATGDVTFDER KESFRCTCSA1380
 1381 DTQFQIQVKD RKIFGSDDDL GEGLFFIDDS GTGVEKKVKV GAGNVIIKSN FILQPEIGEN1440
 1441 SPRASSSAFR KSLLGKRENG KVVRDGGSNT HSPSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle