YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16944678
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.93
Transmembrane Helix	46	66	0.82
Non-Cytoplasmic	67	84	0.87
Transmembrane Helix	85	107	0.81
Cytoplasmic	108	113	0.90
Transmembrane Helix	114	134	0.95
Non-Cytoplasmic	135	143	0.67
Transmembrane Helix	144	164	0.93
Cytoplasmic	165	173	0.81
Transmembrane Helix	174	195	0.93
Non-Cytoplasmic	196	213	0.91
Transmembrane Helix	214	233	0.96
Cytoplasmic	234	278	0.96
Transmembrane Helix	279	300	0.88
Non-Cytoplasmic	301	317	0.83
Transmembrane Helix	318	337	0.94
Cytoplasmic	338	344	0.90
Transmembrane Helix	345	365	0.94
Non-Cytoplasmic	366	371	0.86
Transmembrane Helix	372	393	0.93
Cytoplasmic	394	399	0.85
Transmembrane Helix	400	421	0.91
Non-Cytoplasmic	422	435	0.82
Transmembrane Helix	436	455	0.96
Cytoplasmic	456	491	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDLEKEVAL HHEQTPKDAA SSSSTSLPEL SWTDAEETAI RRKIDWHCVP IVTLLYMLCF  60
   61 LDRVNIGNAR IQGLATDLHL EGTQFNWALS IFYIIYLLFE VPSNVLLKAL GPRFYLPLLV 120
  121 CGFGLVSLCT AFVTNFGGLM GARAVLGVFE GGAMPGMAFF LSTFYKREEL LFRIGIYVSA 180
  181 ASIAGAFGGL LATGLSRIPE WGVAGHTIHT WKNIFFFEGL ITILIGLAAP VWMPTDPRTA 240
  241 WFLNEREKSI AAERLVREHR TDPAQKVEWR HVKLAVMNVH NYTCGIGFFL INITVQGLSV 300
  301 FLPTILKDLG WQNTKAQLYS VPPYVCACLV AIAVAYGSDK SRQRGIWLAA FSVLALIGFA 360
  361 ILRWVSQPNV RYMAVFFVTV GAFPGGPGFL SWAINTVRAV TSGYVVTLGT IGGIVATWTY 420
  421 VPSDAPKYHT GHTINLGGQI GVVCLSIFGI LYCAWENRAR AAGKRDHRLE GLTEEEQEHL 480
  481 GNRHPRFHLW T