YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3378550
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	117	0.98
Transmembrane Helix	118	138	0.93
Non-Cytoplasmic	139	149	0.80
Transmembrane Helix	150	173	0.86
Cytoplasmic	174	180	0.85
Transmembrane Helix	181	203	0.85
Non-Cytoplasmic	204	211	0.69
Transmembrane Helix	212	234	0.86
Cytoplasmic	235	244	0.66
Transmembrane Helix	245	267	0.86
Non-Cytoplasmic	268	274	0.86
Transmembrane Helix	275	300	0.85
Cytoplasmic	301	352	0.95
Transmembrane Helix	353	372	0.91
Non-Cytoplasmic	373	389	0.82
Transmembrane Helix	390	412	0.90
Cytoplasmic	413	429	0.93
Transmembrane Helix	430	451	0.94
Non-Cytoplasmic	452	459	0.83
Transmembrane Helix	460	481	0.89
Cytoplasmic	482	501	0.73
Transmembrane Helix	502	519	0.90
Non-Cytoplasmic	520	529	0.79
Transmembrane Helix	530	552	0.92
Cytoplasmic	553	565	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYRFLRDSF VGRVTYHLSK HKYFAHPEEA KNYIIPEKYL ADYKPTLADD TSINFEKEEI  60
   61 DNQGEPNSSQ SSSSDNTIVD NNNNNNDNDV DGDKIVVTWD GDDDPENPQN WPTLQKAFFI 120
  121 FQISFLTTSV YMGSAVYTPG IEELMHDFGI GRVVATLPLT LFVIGYGVGP LVFSPMSENA 180
  181 IFGRTSIYII TLFLFVILQI PTALVNNIAG LCILRFLGGF FASPCLATGG ASVADVVKFW 240
  241 NLPVGLAAWS LGAVCGPSFG PFFGSILTVK ASWRWTFWFM CIISGFSFVM LCFTLPETFG 300
  301 KTLLYRKAKR LRAITGNDRI TSEGEIENSK MTSHELIIDT LWRPLEITVM EPVVLLINIY 360
  361 IAMVYSILYL FFEVFPIYFV GVKHFTLVEL GTTYMSIVIG IVIAAFIYIP VIRQKFTKPI 420
  421 LRQEQVFPEV FIPIAIVGGI LLTSGLFIFG WSANRTTHWV GPLFGAATTA SGAFLIFQTL 480
  481 FNFMGASFKP HYIASVFASN DLFRSVIASV FPLFGAPLFD NLATPEYPVA WGSSVLGFIT 540
  541 LVMIAIPVLF YLNGPKLRAR SKYAN